Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G056600.2 | Wheat | nucleus | 95.47 | 95.72 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 80.27 | 88.27 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 88.27 | 87.8 |
| Os03t0725800-01 | Rice | nucleus | 73.6 | 76.88 |
| KXG37671 | Sorghum | nucleus | 71.73 | 75.56 |
| Zm00001d033848_P004 | Maize | nucleus | 70.67 | 72.8 |
| Zm00001d013370_P001 | Maize | plastid | 65.33 | 65.68 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 30.93 | 57.71 |
| VIT_07s0205g00160.t01 | Wine grape | nucleus | 26.67 | 53.76 |
| VIT_00s0824g00020.t01 | Wine grape | nucleus | 24.27 | 53.22 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 43.47 | 50.31 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 44.53 | 50.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.13 | 49.07 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 42.13 | 48.32 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 42.4 | 47.89 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 37.33 | 47.46 |
| Solyc01g106460.2.1 | Tomato | nucleus | 28.27 | 43.62 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 30.4 | 42.86 |
| VIT_03s0088g01240.t01 | Wine grape | nucleus | 37.87 | 41.28 |
| CDX89627 | Canola | nucleus | 28.8 | 40.45 |
| CDX93135 | Canola | nucleus | 28.27 | 39.7 |
| Bra013128.1-P | Field mustard | nucleus | 28.27 | 39.7 |
| KRH42021 | Soybean | nucleus | 18.93 | 36.41 |
| AT4G37850.1 | Thale cress | nucleus | 30.67 | 35.06 |
| KRH49880 | Soybean | nucleus | 30.4 | 34.65 |
| CDX89511 | Canola | nucleus | 29.33 | 34.27 |
| Bra011790.1-P | Field mustard | nucleus | 30.67 | 34.23 |
| CDX75679 | Canola | nucleus | 30.67 | 34.23 |
| CDX69336 | Canola | nucleus | 30.67 | 34.02 |
| KRH10664 | Soybean | nucleus | 33.33 | 33.88 |
| CDY25628 | Canola | nucleus | 29.07 | 33.85 |
| Bra030210.1-P | Field mustard | nucleus | 29.07 | 33.85 |
| KRH21680 | Soybean | nucleus, vacuole | 33.87 | 33.78 |
| VIT_07s0205g00180.t01 | Wine grape | nucleus | 31.47 | 33.71 |
| CDY13737 | Canola | nucleus | 26.4 | 33.56 |
| PGSC0003DMT400013074 | Potato | nucleus | 31.47 | 33.43 |
| VIT_00s1314g00010.t01 | Wine grape | nucleus | 29.6 | 33.23 |
| VIT_07s0205g00190.t01 | Wine grape | nucleus | 29.87 | 33.14 |
| AT2G22750.3 | Thale cress | nucleus | 29.33 | 33.03 |
| TraesCS5D01G517900.1 | Wheat | nucleus | 28.53 | 33.02 |
| TraesCS4D01G018800.2 | Wheat | nucleus | 31.73 | 32.87 |
| TraesCS3D01G014900.1 | Wheat | nucleus | 29.33 | 32.74 |
| Bra039924.1-P | Field mustard | nucleus | 27.2 | 32.59 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 19.73 | 32.46 |
| TraesCS4D01G019100.1 | Wheat | nucleus | 31.47 | 32.42 |
| CDX76899 | Canola | nucleus | 27.73 | 32.2 |
| CDY72199 | Canola | nucleus | 28.53 | 32.04 |
| CDY49678 | Canola | nucleus | 28.53 | 32.04 |
| Bra010617.1-P | Field mustard | nucleus | 28.53 | 32.04 |
| PGSC0003DMT400033757 | Potato | nucleus | 17.07 | 30.48 |
| TraesCS4D01G235900.1 | Wheat | nucleus | 26.13 | 30.43 |
| TraesCS4D01G306400.1 | Wheat | nucleus | 13.33 | 30.3 |
| TraesCS4D01G306300.1 | Wheat | nucleus | 27.2 | 29.91 |
| TraesCS4D01G330500.1 | Wheat | nucleus | 25.07 | 29.75 |
| TraesCS4D01G018700.1 | Wheat | nucleus | 28.27 | 29.36 |
| PGSC0003DMT400078698 | Potato | nucleus | 16.27 | 29.19 |
| Solyc06g064590.1.1 | Tomato | nucleus | 21.6 | 28.83 |
| TraesCS4D01G019200.1 | Wheat | nucleus | 27.2 | 28.33 |
| Solyc06g064580.1.1 | Tomato | nucleus | 22.67 | 27.96 |
| Solyc02g091820.1.1 | Tomato | nucleus | 24.27 | 27.91 |
| Solyc02g091810.1.1 | Tomato | nucleus | 23.47 | 27.67 |
| TraesCS5D01G020600.1 | Wheat | nucleus | 27.2 | 27.27 |
| PGSC0003DMT400078699 | Potato | nucleus | 23.2 | 26.93 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 16.53 | 26.5 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 13.33 | 25.38 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 14.13 | 19.0 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 13.6 | 18.55 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 13.07 | 18.49 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 12.53 | 18.36 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 13.33 | 17.92 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 12.27 | 16.85 |
| TraesCS3D01G253700.1 | Wheat | nucleus | 13.6 | 10.97 |
| TraesCS4D01G224600.1 | Wheat | nucleus | 14.93 | 10.05 |
| TraesCS3D01G166300.2 | Wheat | nucleus | 16.0 | 9.6 |
| TraesCS2D01G406900.1 | Wheat | nucleus | 14.4 | 9.52 |
| TraesCS2D01G406800.1 | Wheat | plastid | 11.73 | 9.46 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 17.07 | 9.21 |
| TraesCS4D01G275500.1 | Wheat | nucleus | 14.67 | 9.2 |
| TraesCS2D01G575600.3 | Wheat | nucleus, plastid | 14.4 | 9.17 |
| TraesCS1D01G094200.1 | Wheat | nucleus | 13.07 | 7.77 |
| TraesCS1D01G094000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 2.93 | 5.5 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G056900.2 | EnsemblPlantsGene:TraesCS4D01G056900 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF100 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.7 | : | : |
Description
No Description!
Coordinates
chr4D:+:32063441..32064663
Molecular Weight (calculated)
40424.8 Da
IEP (calculated)
5.696
GRAVY (calculated)
-0.268
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MATQWFSNMV ICCSFSDGVG CNGVGRGGWW LTGCCSWFGG VQVMDEPSFF HQWQSDATLE QYTEQQIAVA FGQGEMEAAA LMQQQQYAAA AAAGEHRPRK
101: AAKVNTSWDS CVTEQGSPAD SSSPTILSFG GHGHADAFAK APQAPSAAAA AYYGAAPVKP KQEVDAGGVA PFQQVKRSYD AMVAEPARAP SRPAAQNQDH
201: IMAERKRREK LSERFIALSK IVPGLKKMDK ASVLGDAIKY VKTLQEQVKG MEEVARRRPV ESAVLVKKSQ LAAEEDDGSS CDENFEGADA GLPEIEARMS
301: DRTVLVKIHC ENRRGVLVAA LSELESIDLA IMNTNVLPFT ASSIDITIMA TAGEDFSLSV KDIVRKLHQA FKSSP
101: AAKVNTSWDS CVTEQGSPAD SSSPTILSFG GHGHADAFAK APQAPSAAAA AYYGAAPVKP KQEVDAGGVA PFQQVKRSYD AMVAEPARAP SRPAAQNQDH
201: IMAERKRREK LSERFIALSK IVPGLKKMDK ASVLGDAIKY VKTLQEQVKG MEEVARRRPV ESAVLVKKSQ LAAEEDDGSS CDENFEGADA GLPEIEARMS
301: DRTVLVKIHC ENRRGVLVAA LSELESIDLA IMNTNVLPFT ASSIDITIMA TAGEDFSLSV KDIVRKLHQA FKSSP
001: MSILSTRWFS EQEIEENSII QQFHMNSIVG EVQEAQYIFP HSFTTNNDPS YDDLIEMKPP KILETTYISP SSHLPPNSKP HHIHRHSSSR ILSFEDYGSN
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
101: DMEHEYSPTY LNSIFSPKLE AQVQPHQKSD EFNRKGTKRA QPFSRNQSNA QDHIIAERKR REKLTQRFVA LSALVPGLKK MDKASVLGDA LKHIKYLQER
201: VGELEEQKKE RRLESMVLVK KSKLILDDNN QSFSSSCEDG FSDLDLPEIE VRFSDEDVLI KILCEKQKGH LAKIMAEIEK LHILITNSSV LNFGPTLDIT
301: IIAKKESDFD MTLMDVVKSL RSALSNFI
Arabidopsis Description
BHLH25Transcription factor bHLH25 [Source:UniProtKB/Swiss-Prot;Acc:Q9T072]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.