Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13737 | Canola | nucleus | 87.31 | 95.59 |
| Bra039924.1-P | Field mustard | nucleus | 92.26 | 95.21 |
| CDX89511 | Canola | nucleus | 81.73 | 82.24 |
| CDY25628 | Canola | nucleus | 81.42 | 81.68 |
| AT2G22750.3 | Thale cress | nucleus | 80.5 | 78.08 |
| CDY72199 | Canola | nucleus | 57.59 | 55.69 |
| CDX75679 | Canola | nucleus | 57.89 | 55.65 |
| CDX69336 | Canola | nucleus | 58.2 | 55.62 |
| CDY49678 | Canola | nucleus | 56.66 | 54.79 |
| GSMUA_Achr8P05170_001 | Banana | nucleus | 27.86 | 44.78 |
| GSMUA_Achr7P00800_001 | Banana | cytosol | 28.79 | 39.74 |
| GSMUA_Achr2P08590_001 | Banana | nucleus | 31.89 | 38.72 |
| GSMUA_Achr3P26180_001 | Banana | nucleus | 33.44 | 36.61 |
| GSMUA_Achr7P27600_001 | Banana | nucleus | 37.77 | 36.53 |
| GSMUA_Achr8P26460_001 | Banana | nucleus | 37.46 | 36.45 |
| CDX89627 | Canola | nucleus | 29.72 | 35.96 |
| CDX93135 | Canola | nucleus | 29.41 | 35.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.29 | 35.4 |
| PGSC0003DMT400033757 | Potato | nucleus | 22.6 | 34.76 |
| GSMUA_Achr3P30620_001 | Banana | nucleus | 34.67 | 34.57 |
| GSMUA_Achr4P03160_001 | Banana | nucleus | 34.67 | 34.25 |
| CDX89512 | Canola | nucleus | 30.65 | 33.45 |
| KXG37671 | Sorghum | nucleus | 36.53 | 33.15 |
| GSMUA_Achr4P23070_001 | Banana | nucleus | 31.89 | 32.91 |
| CDY25629 | Canola | nucleus | 30.34 | 32.67 |
| CDY13735 | Canola | nucleus | 29.1 | 32.53 |
| VIT_00s0927g00010.t01 | Wine grape | nucleus | 22.91 | 32.46 |
| Zm00001d033848_P004 | Maize | nucleus | 35.6 | 31.59 |
| CDY52593 | Canola | nucleus | 27.86 | 31.58 |
| Os03t0725800-01 | Rice | nucleus | 34.67 | 31.2 |
| Solyc05g009640.2.1 | Tomato | cytosol, nucleus, peroxisome | 22.6 | 31.2 |
| KRH42021 | Soybean | nucleus | 18.58 | 30.77 |
| Solyc02g091810.1.1 | Tomato | nucleus | 29.72 | 30.19 |
| PGSC0003DMT400078698 | Potato | nucleus | 19.5 | 30.14 |
| CDY52591 | Canola | nucleus | 29.1 | 29.84 |
| Solyc02g091820.1.1 | Tomato | nucleus | 29.72 | 29.45 |
| CDX89513 | Canola | nucleus | 29.1 | 28.92 |
| CDY25630 | Canola | nucleus | 29.1 | 28.92 |
| HORVU4Hr1G009440.2 | Barley | nucleus | 30.34 | 28.74 |
| Zm00001d013370_P001 | Maize | plastid | 33.13 | 28.69 |
| Solyc06g064580.1.1 | Tomato | nucleus | 26.32 | 27.96 |
| PGSC0003DMT400078699 | Potato | nucleus | 27.86 | 27.86 |
| TraesCS4D01G056900.2 | Wheat | nucleus | 32.2 | 27.73 |
| TraesCS4B01G056600.2 | Wheat | nucleus | 31.89 | 27.54 |
| TraesCS4A01G257900.2 | Wheat | nucleus | 31.89 | 27.32 |
| Solyc06g064590.1.1 | Tomato | nucleus | 23.53 | 27.05 |
| VIT_00s0384g00020.t01 | Wine grape | nucleus | 16.41 | 26.9 |
| CDX77696 | Canola | nucleus | 9.6 | 25.83 |
| GSMUA_Achr4P14580_001 | Banana | nucleus | 25.08 | 24.4 |
| GSMUA_Achr4P03170_001 | Banana | nucleus | 25.08 | 23.75 |
| CDY70013 | Canola | nucleus | 15.17 | 19.44 |
| CDY33482 | Canola | nucleus | 15.17 | 18.08 |
| CDX77699 | Canola | nucleus | 15.17 | 18.08 |
| CDX77688 | Canola | nucleus | 21.05 | 15.04 |
| CDY58502 | Canola | nucleus | 20.74 | 14.92 |
| CDX73261 | Canola | nucleus | 20.43 | 14.9 |
| CDY26910 | Canola | nucleus | 20.43 | 14.9 |
| CDY72121 | Canola | nucleus | 13.93 | 14.61 |
| CDX84081 | Canola | nucleus | 22.29 | 13.61 |
| CDY66312 | Canola | nucleus | 18.58 | 13.1 |
| CDY27319 | Canola | nucleus | 17.96 | 13.09 |
| CDY03195 | Canola | nucleus | 21.36 | 12.66 |
| CDY35179 | Canola | nucleus | 21.67 | 12.46 |
| CDY56874 | Canola | nucleus | 18.89 | 12.42 |
| CDX78808 | Canola | nucleus | 21.98 | 12.26 |
| CDY44507 | Canola | nucleus | 21.98 | 12.12 |
| CDX80023 | Canola | nucleus | 18.27 | 12.12 |
| CDX90021 | Canola | nucleus | 20.12 | 12.04 |
| CDY03185 | Canola | nucleus | 17.34 | 11.84 |
| CDY35183 | Canola | nucleus | 18.58 | 11.83 |
| CDY03183 | Canola | nucleus | 18.58 | 11.79 |
| CDY34468 | Canola | nucleus | 16.41 | 11.75 |
| CDY59973 | Canola | nucleus | 18.27 | 11.59 |
| CDY32242 | Canola | nucleus | 15.79 | 11.31 |
| CDX90525 | Canola | nucleus | 15.79 | 11.18 |
| CDY58950 | Canola | nucleus | 17.96 | 10.05 |
| CDY39747 | Canola | nucleus | 17.34 | 10.02 |
| CDY09695 | Canola | nucleus | 14.55 | 9.65 |
| CDX86891 | Canola | nucleus | 15.48 | 9.6 |
| CDX99505 | Canola | nucleus | 15.48 | 9.6 |
| CDY25513 | Canola | nucleus | 17.03 | 9.53 |
| CDY34367 | Canola | nucleus | 17.03 | 9.23 |
| CDY70506 | Canola | nucleus | 14.55 | 8.8 |
| CDY08314 | Canola | nucleus | 16.41 | 8.76 |
| CDX91907 | Canola | nucleus | 14.24 | 8.46 |
| CDY07214 | Canola | mitochondrion, nucleus | 13.31 | 7.93 |
| CDY51155 | Canola | mitochondrion, nucleus | 13.31 | 7.93 |
| CDY70012 | Canola | nucleus | 4.95 | 5.99 |
| CDX77694 | Canola | nucleus | 4.64 | 5.93 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 2.48 | 4.21 |
Protein Annotations
| EnsemblPlants:CDX76899 | EnsemblPlantsGene:GSBRNA2T00127418001 | Gene3D:4.10.280.10 | GO:A0A078CLI4 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF100 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX76899 | ProteinID:CDX76899.1 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDC801 | MapMan:15.5.32 | MapMan:25.4.1.7 | : |
Description
BnaC08g34850D
Coordinates
chrLK031808:-:1907016..1908569
Molecular Weight (calculated)
36179.4 Da
IEP (calculated)
8.730
GRAVY (calculated)
-0.450
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTMNVWST KWTSGLDIEE YNIIHQYHMN SLLGDFPQSL SSLDDTTTCY NFGASCNDDL VEEKPSKILK TTHESPNLHL YPFPNSTSPH PQPSSRILSF
101: EKTGLKVMNH KSPNLIFSPM EKVGSADLIR RETKKAQPLT RSPSNAQEHI LAERKRREKL TQRFVALSAL IPGLKKMDKA SVLGDAIKHI KYLQESVNEY
201: EKQKKGRTLE SVVLVNKSQL VLDELHKLSP SFSDGNRDYS SSNLPEIEVR VSGKDVLIKI ICEKQKGNLI KIMGEIEKLG LSITNSSLLP FGPTSDISII
301: AQKTSDFDMK VEDVVKSLSY GLS
101: EKTGLKVMNH KSPNLIFSPM EKVGSADLIR RETKKAQPLT RSPSNAQEHI LAERKRREKL TQRFVALSAL IPGLKKMDKA SVLGDAIKHI KYLQESVNEY
201: EKQKKGRTLE SVVLVNKSQL VLDELHKLSP SFSDGNRDYS SSNLPEIEVR VSGKDVLIKI ICEKQKGNLI KIMGEIEKLG LSITNSSLLP FGPTSDISII
301: AQKTSDFDMK VEDVVKSLSY GLS
001: MATAMNVFST KWSSELDIEE YSIIHQFHMN SLVGDVPQSL SSLDDTTTCY NLDASCNKSL VEERPSKILK TTHISPNLHP FSSSNPPPPK HQPSSRILSF
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT
101: EKTGLHVMNH NSPNLIFSPK DEEIGLPEHK KAELIIRGTK RAQSLTRSQS NAQDHILAER KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHIKYLQ
201: ESVKEYEEQK KEKTMESVVL VKKSSLVLDE NHQPSSSSSS DGNRNSSSSN LPEIEVRVSG KDVLIKILCE KQKGNVIKIM GEIEKLGLSI TNSNVLPFGP
301: TFDISIIAQK NNNFDMKIED VVKNLSFGLS KLT
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G22750]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.