Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22760.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G22760.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25629 | Canola | nucleus | 88.51 | 87.33 |
| CDY52593 | Canola | nucleus | 76.01 | 78.95 |
| CDY13735 | Canola | nucleus | 77.03 | 78.89 |
| AT2G22760.1 | Thale cress | nucleus | 73.65 | 73.9 |
| VIT_07s0205g00170.t01 | Wine grape | cytosol | 19.26 | 45.24 |
| CDX89513 | Canola | nucleus | 42.91 | 39.08 |
| CDY52591 | Canola | nucleus | 40.2 | 37.78 |
| CDY25630 | Canola | nucleus | 41.22 | 37.54 |
| CDY13737 | Canola | nucleus | 32.09 | 32.2 |
| CDX76899 | Canola | nucleus | 33.45 | 30.65 |
| CDX89511 | Canola | nucleus | 33.11 | 30.53 |
| CDY25628 | Canola | nucleus | 32.09 | 29.5 |
| KRH28295 | Soybean | nucleus | 31.08 | 29.39 |
| KRH77195 | Soybean | nucleus | 36.49 | 29.35 |
| CDX89627 | Canola | nucleus | 26.01 | 28.84 |
| CDX93135 | Canola | nucleus | 26.01 | 28.84 |
| CDY72199 | Canola | nucleus | 32.09 | 28.44 |
| KRH28296 | Soybean | nucleus | 33.45 | 28.37 |
| CDY49678 | Canola | nucleus | 31.76 | 28.14 |
| CDX75679 | Canola | nucleus | 31.76 | 27.98 |
| KRH04348 | Soybean | nucleus | 35.14 | 27.88 |
| KRH58186 | Soybean | nucleus | 33.78 | 27.7 |
| CDX69336 | Canola | nucleus | 31.42 | 27.51 |
| KRH77192 | Soybean | nucleus | 31.42 | 27.27 |
| KRH58189 | Soybean | nucleus | 32.09 | 24.87 |
| KRH04346 | Soybean | nucleus | 30.74 | 24.53 |
| CDX77696 | Canola | nucleus | 7.09 | 17.5 |
| CDX77699 | Canola | nucleus | 14.53 | 15.87 |
| CDY33482 | Canola | nucleus | 14.53 | 15.87 |
| CDY70013 | Canola | nucleus | 13.18 | 15.48 |
| CDY72121 | Canola | nucleus | 14.86 | 14.29 |
| CDY58502 | Canola | nucleus | 17.91 | 11.8 |
| CDX77688 | Canola | nucleus | 17.91 | 11.73 |
| CDY27319 | Canola | nucleus | 15.88 | 10.61 |
| CDX73261 | Canola | nucleus | 15.88 | 10.61 |
| CDY26910 | Canola | nucleus | 15.88 | 10.61 |
| CDY34468 | Canola | nucleus | 15.88 | 10.42 |
| CDX84081 | Canola | nucleus | 18.58 | 10.4 |
| CDY66312 | Canola | nucleus | 15.54 | 10.04 |
| CDY32242 | Canola | nucleus | 15.2 | 9.98 |
| CDX80023 | Canola | nucleus | 15.88 | 9.65 |
| CDY03185 | Canola | nucleus | 15.2 | 9.51 |
| CDY35179 | Canola | nucleus | 17.91 | 9.43 |
| CDX90525 | Canola | nucleus | 14.53 | 9.43 |
| CDX99505 | Canola | nucleus | 16.55 | 9.4 |
| CDX86891 | Canola | nucleus | 16.55 | 9.4 |
| CDY56874 | Canola | nucleus | 15.54 | 9.37 |
| CDY03195 | Canola | nucleus | 17.23 | 9.36 |
| CDY58950 | Canola | nucleus | 17.91 | 9.19 |
| CDY39747 | Canola | nucleus | 17.23 | 9.12 |
| CDY35183 | Canola | nucleus | 15.54 | 9.07 |
| CDY25513 | Canola | nucleus | 17.23 | 8.84 |
| CDY09695 | Canola | nucleus | 14.53 | 8.83 |
| CDX78808 | Canola | nucleus | 17.23 | 8.81 |
| CDY34367 | Canola | nucleus | 17.57 | 8.72 |
| CDY44507 | Canola | nucleus | 17.23 | 8.7 |
| CDY59973 | Canola | nucleus | 14.53 | 8.45 |
| CDY03183 | Canola | nucleus | 14.53 | 8.45 |
| CDY08314 | Canola | nucleus | 16.89 | 8.26 |
| CDX90021 | Canola | nucleus | 14.19 | 7.78 |
| CDY70506 | Canola | nucleus | 13.51 | 7.49 |
| CDX91907 | Canola | nucleus | 12.84 | 6.99 |
| CDY51155 | Canola | mitochondrion, nucleus | 12.16 | 6.64 |
| CDY07214 | Canola | mitochondrion, nucleus | 12.16 | 6.64 |
| CDX77694 | Canola | nucleus | 3.38 | 3.95 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 1.69 | 2.63 |
| CDY70012 | Canola | nucleus | 1.69 | 1.87 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | GO:A0A078DKX7 | EnsemblPlants:CDX89512 | ProteinID:CDX89512 |
| ProteinID:CDX89512.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00149793001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR11514 | PANTHER:PTHR11514:SF48 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE0FA4 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g35310D
Coordinates
chrLK031859:+:601594..602757
Molecular Weight (calculated)
33726.8 Da
IEP (calculated)
7.025
GRAVY (calculated)
-0.330
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADFFLTDF SLENIDFDFN IYEEMNVSPV EASMHTQRGQ FSSSFDNQMN LDQLTEKPKP AVKEMMINNK PRVISFDFSS NVSSSLAEED ILMDRLVRCG
101: SKRKACSSST RSPTLAKEHV IAERKRREKL SEKFIALSAL LPGLKKADKI TVLDDAISRV KQLQEQIRKL NEEKEARREM ESMILVKKSK VLFDEEPYLS
201: SSSSSSSHAK FDQLLPEIEA KVVQKEVLIR IHCEKRKGCM INILNTIENL HLRIENSIVL PFGDSTLDIT VLAQMGKDFS VCAVKDLVRN LRLSMV
101: SKRKACSSST RSPTLAKEHV IAERKRREKL SEKFIALSAL LPGLKKADKI TVLDDAISRV KQLQEQIRKL NEEKEARREM ESMILVKKSK VLFDEEPYLS
201: SSSSSSSHAK FDQLLPEIEA KVVQKEVLIR IHCEKRKGCM INILNTIENL HLRIENSIVL PFGDSTLDIT VLAQMGKDFS VCAVKDLVRN LRLSMV
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.