Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013263.1-P | Field mustard | nucleus | 45.94 | 98.16 |
| CDY44507 | Canola | nucleus | 97.58 | 96.42 |
| Bra013264.1-P | Field mustard | nucleus | 47.5 | 92.59 |
| AT4G17880.1 | Thale cress | nucleus | 75.82 | 74.53 |
| CDX77688 | Canola | nucleus | 54.75 | 70.13 |
| CDY58502 | Canola | nucleus | 54.23 | 69.93 |
| CDY03195 | Canola | nucleus | 62.69 | 66.61 |
| CDY35179 | Canola | nucleus | 63.21 | 65.12 |
| CDX73261 | Canola | nucleus | 41.28 | 53.95 |
| CDY26910 | Canola | nucleus | 41.11 | 53.72 |
| Solyc08g005050.2.1 | Tomato | nucleus | 41.97 | 52.37 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 58.55 | 51.13 |
| PGSC0003DMT400002963 | Potato | nucleus | 51.99 | 50.33 |
| KRH75613 | Soybean | nucleus | 54.58 | 49.61 |
| CDX84081 | Canola | nucleus | 43.87 | 48.02 |
| KRH45440 | Soybean | nucleus | 53.71 | 47.55 |
| CDX77696 | Canola | nucleus | 9.67 | 46.67 |
| Solyc08g076930.1.1 | Tomato | nucleus | 55.44 | 46.59 |
| PGSC0003DMT400045204 | Potato | nucleus | 55.61 | 46.4 |
| KRH74418 | Soybean | nucleus | 51.3 | 46.26 |
| CDY59973 | Canola | nucleus | 38.17 | 43.42 |
| CDY03185 | Canola | nucleus | 35.41 | 43.34 |
| KRH39540 | Soybean | nucleus | 53.89 | 42.68 |
| CDY03183 | Canola | nucleus | 36.96 | 42.04 |
| CDY35183 | Canola | nucleus | 36.61 | 41.81 |
| CDX77699 | Canola | nucleus | 19.0 | 40.59 |
| CDY33482 | Canola | nucleus | 18.65 | 39.85 |
| CDX77694 | Canola | nucleus | 16.75 | 38.34 |
| CDY27319 | Canola | nucleus | 25.73 | 33.63 |
| CDY70013 | Canola | nucleus | 14.34 | 32.94 |
| CDX80023 | Canola | nucleus | 27.12 | 32.24 |
| CDY66312 | Canola | nucleus | 25.39 | 32.1 |
| CDY56874 | Canola | nucleus | 26.94 | 31.77 |
| CDX90525 | Canola | nucleus | 23.32 | 29.61 |
| CDY34468 | Canola | nucleus | 22.8 | 29.27 |
| CDY32242 | Canola | nucleus | 22.63 | 29.05 |
| CDX90021 | Canola | nucleus | 26.6 | 28.52 |
| CDY45357 | Canola | cytosol, golgi, nucleus | 9.15 | 27.89 |
| CDY70012 | Canola | nucleus | 11.92 | 25.84 |
| CDY09695 | Canola | nucleus | 21.42 | 25.46 |
| CDX86891 | Canola | nucleus | 21.07 | 23.42 |
| CDX99505 | Canola | nucleus | 21.07 | 23.42 |
| CDY13737 | Canola | nucleus | 11.4 | 22.37 |
| CDX76899 | Canola | nucleus | 12.26 | 21.98 |
| CDY25628 | Canola | nucleus | 11.74 | 21.12 |
| CDX89627 | Canola | nucleus | 9.67 | 20.97 |
| CDX93135 | Canola | nucleus | 9.67 | 20.97 |
| CDY49678 | Canola | nucleus | 12.09 | 20.96 |
| CDY72199 | Canola | nucleus | 11.74 | 20.36 |
| CDX89511 | Canola | nucleus | 11.23 | 20.25 |
| CDX75679 | Canola | nucleus | 11.74 | 20.24 |
| CDX69336 | Canola | nucleus | 11.4 | 19.53 |
| CDY39747 | Canola | nucleus | 17.96 | 18.6 |
| CDY58950 | Canola | nucleus | 18.31 | 18.37 |
| CDY25513 | Canola | nucleus | 18.13 | 18.2 |
| CDY70506 | Canola | nucleus | 16.41 | 17.79 |
| CDY52591 | Canola | nucleus | 9.67 | 17.78 |
| CDY13735 | Canola | nucleus | 8.81 | 17.65 |
| CDY52593 | Canola | nucleus | 8.64 | 17.54 |
| CDX89513 | Canola | nucleus | 9.84 | 17.54 |
| CDY34367 | Canola | nucleus | 17.96 | 17.45 |
| CDY07214 | Canola | mitochondrion, nucleus | 16.23 | 17.34 |
| CDY25630 | Canola | nucleus | 9.67 | 17.23 |
| CDX89512 | Canola | nucleus | 8.81 | 17.23 |
| CDX91907 | Canola | nucleus | 16.06 | 17.1 |
| CDY08314 | Canola | nucleus | 17.79 | 17.02 |
| CDY51155 | Canola | mitochondrion, nucleus | 15.89 | 16.97 |
| CDY25629 | Canola | nucleus | 8.64 | 16.67 |
| CDY72121 | Canola | nucleus | 8.46 | 15.91 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078CUH5 | EnsemblPlants:CDX78808 | ProteinID:CDX78808 | ProteinID:CDX78808.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00131278001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:MYC/MYB_N | PFAM:PF00010 | PFAM:PF14215 |
| PFscan:PS50888 | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF43 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE28E0 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA01g08750D
Coordinates
chrLK031816:-:183040..185147
Molecular Weight (calculated)
63352.9 Da
IEP (calculated)
5.041
GRAVY (calculated)
-0.639
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTNVQLTD HHLNQSTNGT NLWSTTEDNA SVMEPLIGSE HSSLWPQPPL TPPPPHVTED TLQQRLQALI EGARESWTYA VFWQLSHDFA GEDISNTAAL
101: LSWGDGYYKG EEERKSRKRK PNPVSAAEQE HRKRVIRELN SLISGGGGGG GTAGDEDVSD TEWFFLVSMT QSFANGSGLP GRAFSSSRTI WLSGSNALAG
201: SSCERARQGQ VYGLETMVCI PTQNGVVELG SLEIIHQSSE LVDKVNSFFS FNGGGGGGES GSWAFNLNPD QGENDPATWI NEPNVTGIEP VLGAPATSNS
301: DSQTASKLCN GSSVEHPKQQ QNPQISSSGF VEGDSNKKKR CLVSDKEEEM LSFTSVLPLP TKSNDSNRSD LEASVVKEAE SGRIAAEPEK KPRKRGRKPA
401: NGREEPLNHV EAERQRREKL NQRFYSLRAV VPNVSKMDKA SLLGDAISYI NELKAKLQKA EADKEELQKQ IDGMSKEVGD GNVKSSVKDQ KCLEQDSGVS
501: VEVEIDVKII GWDAMIRIQC GKKDHPGAKF MEALKELELE VNHASLSVVN EFMIQQATVK MGNQFFTQDQ LKAALMERV
101: LSWGDGYYKG EEERKSRKRK PNPVSAAEQE HRKRVIRELN SLISGGGGGG GTAGDEDVSD TEWFFLVSMT QSFANGSGLP GRAFSSSRTI WLSGSNALAG
201: SSCERARQGQ VYGLETMVCI PTQNGVVELG SLEIIHQSSE LVDKVNSFFS FNGGGGGGES GSWAFNLNPD QGENDPATWI NEPNVTGIEP VLGAPATSNS
301: DSQTASKLCN GSSVEHPKQQ QNPQISSSGF VEGDSNKKKR CLVSDKEEEM LSFTSVLPLP TKSNDSNRSD LEASVVKEAE SGRIAAEPEK KPRKRGRKPA
401: NGREEPLNHV EAERQRREKL NQRFYSLRAV VPNVSKMDKA SLLGDAISYI NELKAKLQKA EADKEELQKQ IDGMSKEVGD GNVKSSVKDQ KCLEQDSGVS
501: VEVEIDVKII GWDAMIRIQC GKKDHPGAKF MEALKELELE VNHASLSVVN EFMIQQATVK MGNQFFTQDQ LKAALMERV
001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP
Arabidopsis Description
MYC4Transcription factor MYC4 [Source:UniProtKB/Swiss-Prot;Acc:O49687]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.