Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017527.1-P | Field mustard | nucleus | 64.94 | 77.88 |
| CDX78808 | Canola | nucleus | 98.16 | 45.94 |
| CDY44507 | Canola | nucleus | 97.42 | 45.05 |
| AT4G17880.1 | Thale cress | nucleus | 77.49 | 35.65 |
| Bra024992.1-P | Field mustard | nucleus | 34.32 | 34.32 |
| Bra024998.1-P | Field mustard | nucleus | 68.63 | 32.07 |
| Zm00001d031717_P001 | Maize | nucleus | 26.94 | 28.74 |
| HORVU5Hr1G080080.1 | Barley | nucleus, plastid | 21.4 | 27.62 |
| PGSC0003DMT400002963 | Potato | nucleus | 60.89 | 27.59 |
| HORVU5Hr1G079900.1 | Barley | cytosol | 27.31 | 27.41 |
| Solyc08g005050.2.1 | Tomato | nucleus | 46.49 | 27.16 |
| TraesCS2B01G469200.1 | Wheat | nucleus | 24.35 | 26.83 |
| TraesCSU01G222600.1 | Wheat | nucleus | 24.35 | 26.83 |
| VIT_02s0012g01320.t01 | Wine grape | nucleus | 65.31 | 26.7 |
| TraesCS5B01G307000.1 | Wheat | nucleus | 27.31 | 26.52 |
| TraesCS5A01G306200.1 | Wheat | nucleus | 27.31 | 26.52 |
| Os09t0519100-00 | Rice | nucleus | 25.83 | 26.52 |
| OQU80776 | Sorghum | nucleus | 25.46 | 26.24 |
| OQU75588 | Sorghum | nucleus | 25.46 | 26.24 |
| TraesCS2A01G448500.1 | Wheat | nucleus | 24.72 | 26.17 |
| TraesCS5D01G313500.1 | Wheat | nucleus | 26.94 | 26.16 |
| TraesCS5D01G313600.1 | Wheat | nucleus | 26.94 | 26.16 |
| TraesCS1D01G374800.1 | Wheat | nucleus | 25.46 | 26.04 |
| TraesCS5A01G306400.1 | Wheat | nucleus | 21.4 | 26.01 |
| OQU80778 | Sorghum | nucleus | 25.83 | 25.93 |
| Os08t0543700-00 | Rice | nucleus, peroxisome, plastid | 25.09 | 25.86 |
| TraesCS2B01G469300.1 | Wheat | nucleus | 24.35 | 25.78 |
| TraesCS5A01G306500.1 | Wheat | nucleus | 26.57 | 25.62 |
| HORVU0Hr1G025420.1 | Barley | cytosol, nucleus | 15.5 | 25.61 |
| Zm00001d052728_P001 | Maize | nucleus | 25.83 | 25.45 |
| EER97058 | Sorghum | cytosol, nucleus, plastid | 25.83 | 25.36 |
| TraesCS5B01G306800.1 | Wheat | nucleus | 26.2 | 25.36 |
| TraesCS5B01G306600.1 | Wheat | nucleus | 25.46 | 25.27 |
| KRH75613 | Soybean | nucleus | 59.41 | 25.27 |
| TraesCS1A01G369200.1 | Wheat | nucleus | 18.45 | 25.25 |
| OQU86344 | Sorghum | nucleus | 23.62 | 25.0 |
| TraesCS7D01G102200.1 | Wheat | nucleus | 23.62 | 25.0 |
| TraesCS5B01G307100.1 | Wheat | nucleus | 25.09 | 24.91 |
| TraesCS5D01G313400.1 | Wheat | nucleus | 25.09 | 24.91 |
| KXG25462 | Sorghum | nucleus | 25.46 | 24.82 |
| Zm00001d006150_P001 | Maize | nucleus | 26.57 | 24.74 |
| TraesCS5A01G306600.1 | Wheat | nucleus | 25.09 | 24.73 |
| TraesCS5A01G306700.1 | Wheat | peroxisome | 24.72 | 24.45 |
| Solyc08g076930.1.1 | Tomato | nucleus | 61.99 | 24.38 |
| TraesCS5D01G313700.1 | Wheat | nucleus | 24.72 | 24.36 |
| PGSC0003DMT400045204 | Potato | nucleus | 62.36 | 24.35 |
| OQU80777 | Sorghum | nucleus | 25.09 | 24.29 |
| KRH45440 | Soybean | nucleus | 58.3 | 24.16 |
| EER99201 | Sorghum | nucleus | 26.2 | 23.99 |
| HORVU5Hr1G080040.1 | Barley | nucleus | 23.62 | 23.88 |
| Zm00001d021164_P001 | Maize | nucleus | 25.46 | 23.79 |
| KRH74418 | Soybean | nucleus | 56.09 | 23.68 |
| Bra010178.1-P | Field mustard | nucleus | 52.03 | 23.5 |
| TraesCS1B01G387900.1 | Wheat | nucleus | 20.66 | 23.43 |
| OQU80775 | Sorghum | cytosol, nucleus, peroxisome, plastid | 23.99 | 23.3 |
| Bra017520.1-P | Field mustard | nucleus | 42.8 | 23.29 |
| Bra017523.1-P | Field mustard | nucleus | 41.33 | 22.09 |
| KRH39540 | Soybean | nucleus | 58.67 | 21.75 |
| HORVU1Hr1G050560.1 | Barley | nucleus | 54.24 | 21.49 |
| TraesCS1B01G208000.1 | Wheat | nucleus | 54.24 | 21.21 |
| TraesCS1A01G193200.1 | Wheat | nucleus | 54.24 | 21.21 |
| TraesCS1D01G196900.1 | Wheat | nucleus | 54.24 | 21.15 |
| Os10t0575000-01 | Rice | nucleus | 54.24 | 21.03 |
| Zm00001d030028_P001 | Maize | nucleus | 54.24 | 20.85 |
| KXG39194 | Sorghum | nucleus | 53.87 | 20.65 |
| Zm00001d047017_P001 | Maize | nucleus | 53.51 | 20.63 |
| Bra013128.1-P | Field mustard | nucleus | 18.08 | 18.35 |
| Bra038458.1-P | Field mustard | nucleus | 29.52 | 17.74 |
| Bra004532.1-P | Field mustard | nucleus | 31.73 | 17.7 |
| Bra039279.1-P | Field mustard | nucleus | 29.52 | 17.43 |
| Bra012720.1-P | Field mustard | nucleus | 29.15 | 17.32 |
| Bra039924.1-P | Field mustard | nucleus | 19.93 | 17.25 |
| Bra030210.1-P | Field mustard | nucleus | 19.56 | 16.46 |
| Bra024993.1-P | Field mustard | nucleus | 22.51 | 16.18 |
| Bra010617.1-P | Field mustard | nucleus | 19.93 | 16.17 |
| Bra011790.1-P | Field mustard | nucleus | 19.93 | 16.07 |
| Bra039926.1-P | Field mustard | nucleus | 15.87 | 14.83 |
| Bra039927.1-P | Field mustard | nucleus | 16.97 | 14.56 |
| Bra033273.1-P | Field mustard | nucleus | 31.37 | 14.55 |
| Bra030208.1-P | Field mustard | nucleus | 16.24 | 14.47 |
| Bra030207.1-P | Field mustard | nucleus | 17.34 | 14.42 |
| Bra037887.1-P | Field mustard | nucleus | 20.3 | 11.07 |
| Bra027796.1-P | Field mustard | nucleus | 18.45 | 8.25 |
| Bra027653.1-P | Field mustard | nucleus | 17.34 | 7.89 |
| Bra025508.1-P | Field mustard | nucleus | 17.71 | 7.63 |
| Bra000970.1-P | Field mustard | nucleus | 14.39 | 5.96 |
| Bra037343.1-P | Field mustard | cytosol | 14.02 | 5.34 |
| Bra013264.1-P | Field mustard | nucleus | 0.37 | 0.34 |
Protein Annotations
| EnsemblPlants:Bra013263.1 | EnsemblPlants:Bra013263.1-P | EnsemblPlantsGene:Bra013263 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR11514 | PANTHER:PTHR11514:SF43 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002545CD7 | UniProt:M4D9V3 | MapMan:15.5.32 | : |
Description
AT4G17880 (E=5e-096) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA01:-:4601288..4602186
Molecular Weight (calculated)
30465.4 Da
IEP (calculated)
8.464
GRAVY (calculated)
-0.759
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRISVEHPK QQQNPQISSS GFVEGDSNKK KRCLVSDKEE EMLSFTSVLP LPTKSNDSNR SDLEASVVKE AESGRIAAEP EKKPRKRGRK PANGREEPLN
101: HVEAERQRRE KLNQRFYSLR AVVPNVSKMD KASLLGDAIS YINELKAKLQ KAEADKEELQ KQIDGMSKEV GDGNVKSSVK DQKCLEQDSG VSIEVEIDVK
201: IIGWDAMIRI QCGKKNHPGA KFMEALKELE LEVNHASLSV VNEFMIQQAT VKMGNQFFTQ DQLKAALMER V
101: HVEAERQRRE KLNQRFYSLR AVVPNVSKMD KASLLGDAIS YINELKAKLQ KAEADKEELQ KQIDGMSKEV GDGNVKSSVK DQKCLEQDSG VSIEVEIDVK
201: IIGWDAMIRI QCGKKNHPGA KFMEALKELE LEVNHASLSV VNEFMIQQAT VKMGNQFFTQ DQLKAALMER V
001: MSPTNVQVTD YHLNQSKTDT TNLWSTDDDA SVMEAFIGGG SDHSSLFPPL PPPPLPQVNE DNLQQRLQAL IEGANENWTY AVFWQSSHGF AGEDNNNNNT
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP
101: VLLGWGDGYY KGEEEKSRKK KSNPASAAEQ EHRKRVIREL NSLISGGVGG GDEAGDEEVT DTEWFFLVSM TQSFVKGTGL PGQAFSNSDT IWLSGSNALA
201: GSSCERARQG QIYGLQTMVC VATENGVVEL GSSEIIHQSS DLVDKVDTFF NFNNGGGEFG SWAFNLNPDQ GENDPGLWIS EPNGVDSGLV AAPVMNNGGN
301: DSTSNSDSQP ISKLCNGSSV ENPNPKVLKS CEMVNFKNGI ENGQEEDSSN KKRSPVSNNE EGMLSFTSVL PCDSNHSDLE ASVAKEAESN RVVVEPEKKP
401: RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP NVSKMDKASL LGDAISYISE LKSKLQKAES DKEELQKQID VMNKEAGNAK SSVKDRKCLN
501: QESSVLIEME VDVKIIGWDA MIRIQCSKRN HPGAKFMEAL KELDLEVNHA SLSVVNDLMI QQATVKMGNQ FFTQDQLKVA LTEKVGECP
Arabidopsis Description
MYC4Transcription factor MYC4 [Source:UniProtKB/Swiss-Prot;Acc:O49687]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.