Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra023252.1-P | |
| Bra035511.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G22760.1 | Bra023252.1-P | AT1G32230.1 | 19548978 |
| AT2G22760.1 | Bra035511.1-P | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13735 | Canola | nucleus | 97.93 | 98.27 |
| CDY52593 | Canola | nucleus | 92.76 | 94.39 |
| Bra030208.1-P | Field mustard | nucleus | 77.93 | 74.34 |
| AT2G22760.1 | Thale cress | nucleus | 75.17 | 73.9 |
| VIT_07s0205g00170.t01 | Wine grape | cytosol | 19.31 | 44.44 |
| Bra039927.1-P | Field mustard | nucleus | 43.45 | 39.87 |
| Bra030207.1-P | Field mustard | nucleus | 42.76 | 38.04 |
| KRH28295 | Soybean | nucleus | 32.07 | 29.71 |
| Bra039924.1-P | Field mustard | nucleus | 32.07 | 29.71 |
| Bra010617.1-P | Field mustard | nucleus | 33.79 | 29.34 |
| Bra013128.1-P | Field mustard | nucleus | 26.55 | 28.84 |
| Bra011790.1-P | Field mustard | nucleus | 33.1 | 28.57 |
| Bra030210.1-P | Field mustard | nucleus | 31.38 | 28.26 |
| KRH77195 | Soybean | nucleus | 35.52 | 27.99 |
| KRH28296 | Soybean | nucleus | 32.41 | 26.93 |
| KRH77192 | Soybean | nucleus | 31.38 | 26.69 |
| KRH04348 | Soybean | nucleus | 33.1 | 25.74 |
| KRH58186 | Soybean | nucleus | 31.38 | 25.21 |
| KRH58189 | Soybean | nucleus | 32.76 | 24.87 |
| KRH04346 | Soybean | nucleus | 31.72 | 24.8 |
| Bra017527.1-P | Field mustard | nucleus | 14.48 | 18.58 |
| Bra013263.1-P | Field mustard | nucleus | 14.83 | 15.87 |
| Bra024992.1-P | Field mustard | nucleus | 14.83 | 15.87 |
| Bra037887.1-P | Field mustard | nucleus | 16.21 | 9.46 |
| Bra039279.1-P | Field mustard | nucleus | 14.83 | 9.37 |
| Bra004532.1-P | Field mustard | nucleus | 15.52 | 9.26 |
| Bra038458.1-P | Field mustard | nucleus | 14.14 | 9.09 |
| Bra017523.1-P | Field mustard | nucleus | 15.52 | 8.88 |
| Bra024998.1-P | Field mustard | nucleus | 16.9 | 8.45 |
| Bra012720.1-P | Field mustard | nucleus | 13.1 | 8.33 |
| Bra017520.1-P | Field mustard | nucleus | 14.14 | 8.23 |
| Bra010178.1-P | Field mustard | nucleus | 16.9 | 8.17 |
| Bra024993.1-P | Field mustard | nucleus | 10.34 | 7.96 |
| Bra025508.1-P | Field mustard | nucleus | 16.55 | 7.63 |
| Bra027796.1-P | Field mustard | nucleus | 15.52 | 7.43 |
| Bra027653.1-P | Field mustard | nucleus | 14.83 | 7.21 |
| Bra033273.1-P | Field mustard | nucleus | 14.14 | 7.02 |
| Bra000970.1-P | Field mustard | nucleus | 13.45 | 5.96 |
| Bra037343.1-P | Field mustard | cytosol | 11.72 | 4.78 |
| Bra013264.1-P | Field mustard | nucleus | 2.41 | 2.36 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.7 | Gene3D:4.10.280.10 | EnsemblPlantsGene:Bra039926 | EnsemblPlants:Bra039926.1 | EnsemblPlants:Bra039926.1-P |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M4FFQ2 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF100 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002542EF1 | InterPro:bHLH_dom | SEG:seg |
Description
AT2G22760 (E=2e-098) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA09:-:31818705..31820076
Molecular Weight (calculated)
33210.9 Da
IEP (calculated)
6.014
GRAVY (calculated)
-0.352
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEDFFLTDF SLEDIDFDFN IYEETNVSPV EASIHTERAQ FIEHQVPLNY LNEKPKPVVK INNKPRLISF DFSSNVSSSP AREDIITDQL VTRGTKRKSC
101: SPAKRSPVFA KEHVIAERKR REKLSEKFIA LSALLPGLKK ADKITVLDDA ISRLKQLQEQ IRKLKEEKEA TRHMESMILV KKSKVFLDEG TFLSSSSSSS
201: DHEQFDQPLP EIEAKVAQNE VLIRIHCEKS KGSMIDILNT IENFQLRVEN SIVLPFGESI LDITILAQMR KDFLVSALED FVRNLRLAMV
101: SPAKRSPVFA KEHVIAERKR REKLSEKFIA LSALLPGLKK ADKITVLDDA ISRLKQLQEQ IRKLKEEKEA TRHMESMILV KKSKVFLDEG TFLSSSSSSS
201: DHEQFDQPLP EIEAKVAQNE VLIRIHCEKS KGSMIDILNT IENFQLRVEN SIVLPFGESI LDITILAQMR KDFLVSALED FVRNLRLAMV
001: MDEDFFLPDF SLVDIDFDFN IYEENNLSPD ESLSNSRRAD QSSKFDHQMH FECLREKPKA AVKPMMKINN KQQLISFDFS SNVISSPAAE EIIMDKLVGR
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
101: GTKRKTCSHG TRSPVLAKEH VLAERKRREK LSEKFIALSA LLPGLKKADK VTILDDAISR MKQLQEQLRT LKEEKEATRQ MESMILVKKS KVFFDEEPNL
201: SCSPSVHIEF DQALPEIEAK ISQNDILIRI LCEKSKGCMI NILNTIENFQ LRIENSIVLP FGDSTLDITV LAQMDKDFSM SILKDLVRNL RLAMV
Arabidopsis Description
BHLH19Uncharacterized protein At2g22760 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.