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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000011.1-P
Bra000560.1-P
Bra001386.1-P
Bra002964.1-P
Bra003782.1-P
Bra005177.1-P
Bra005486.1-P
Bra005779.1-P
Bra005852.1-P
Bra009112.1-P
Bra009512.1-P
Bra012972.1-P
Bra013048.1-P
Bra015469.1-P
Bra015885.1-P
Bra017430.1-P
Bra020709.1-P
Bra021860.1-P
Bra022738.1-P
Bra028759.1-P
Bra029011.1-P
Bra029889.1-P
Bra030208.1-P
Bra030635.1-P
Bra031950.1-P
Bra032441.1-P
Bra034159.1-P
Bra036315.1-P
Bra037290.1-P
Bra037312.1-P
Bra037499.1-P
Bra039926.1-P
Bra040153.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G32230.1 Bra015469.1-P AT1G06040.1 11018516
AT1G32230.1 Bra030635.1-P AT1G06040.1 11018516
AT1G32230.1 Bra032441.1-P AT1G06040.1 11018516
AT1G32230.1 Bra015469.1-P AT1G06040.1 19548978
AT1G32230.1 Bra030635.1-P AT1G06040.1 19548978
AT1G32230.1 Bra032441.1-P AT1G06040.1 19548978
AT1G32230.1 Bra003782.1-P AT1G74890.1 19548978
AT1G32230.1 Bra015885.1-P AT1G74890.1 19548978
AT1G32230.1 Bra017430.1-P AT2G01980.1 17023541
AT1G32230.1 Bra013048.1-P AT2G16770.1 19548978
AT1G32230.1 Bra037290.1-P AT2G16770.1 19548978
AT1G32230.1 Bra030208.1-P AT2G22760.1 19548978
AT1G32230.1 Bra039926.1-P AT2G22760.1 19548978
AT1G32230.1 Bra005486.1-P AT2G33550.1 19548978
AT1G32230.1 Bra021860.1-P AT2G33550.1 19548978
AT1G32230.1 Bra000011.1-P AT2G37630.1 19548978
AT1G32230.1 Bra005177.1-P AT2G37630.1 19548978
AT1G32230.1 Bra031950.1-P AT3G04060.1 19548978
AT1G32230.1 Bra040153.1-P AT3G04060.1 19548978
AT1G32230.1 Bra031950.1-P AT3G04060.1 25348421
AT1G32230.1 Bra040153.1-P AT3G04060.1 25348421
AT1G32230.1 Bra001386.1-P AT3G11020.1 19548978
AT1G32230.1 Bra029889.1-P AT3G11020.1 19548978
AT1G32230.1 Bra034159.1-P AT3G11020.1 19548978
AT1G32230.1 Bra000560.1-P AT4G00050.1 19548978
AT1G32230.1 Bra037312.1-P AT4G00050.1 19548978
AT1G32230.1 Bra036315.1-P AT4G01720.1 19548978
AT1G32230.1 Bra005779.1-P AT5G03760.1 19548978
AT1G32230.1 Bra009512.1-P AT5G03760.1 19548978
AT1G32230.1 Bra005852.1-P AT5G05410.1 19548978
AT1G32230.1 Bra009112.1-P AT5G05410.1 19548978
AT1G32230.1 Bra028759.1-P AT5G05410.1 19548978
AT1G32230.1 Bra020709.1-P AT5G48250.1 19548978
AT1G32230.1 Bra037499.1-P AT5G48250.1 19548978
AT1G32230.1 Bra002964.1-P AT5G54680.1 19548978
AT1G32230.1 Bra022738.1-P AT5G54680.1 19548978
AT1G32230.1 Bra029011.1-P AT5G54680.1 19548978
AT1G32230.1 Bra012972.1-P AT5G61270.1 19548978
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67026 Canola nucleus 91.91 80.55
CDY22597 Canola nucleus 89.21 79.04
Bra035511.1-P Field mustard cytosol 72.41 62.54
AT1G32230.1 Thale cress nucleus 73.24 59.93
Bra005336.1-P Field mustard cytosol, nucleus, plastid 48.55 44.66
Bra017317.1-P Field mustard nucleus 47.3 43.02
VIT_02s0012g01930.t01 Wine grape nucleus 43.36 33.55
VIT_02s0012g01920.t01 Wine grape cytosol 36.72 33.21
Solyc08g005270.2.1 Tomato nucleus 39.83 32.0
KRH39574 Soybean mitochondrion, nucleus, plastid 38.59 31.9
KRH74370 Soybean mitochondrion, nucleus, plastid 38.38 31.73
PGSC0003DMT400038368 Potato nucleus 36.31 29.71
PGSC0003DMT400043197 Potato nucleus 36.31 29.46
GSMUA_Achr11P... Banana nucleus 29.88 27.69
GSMUA_Achr5P14120_001 Banana nucleus 30.5 25.97
Bra016219.1-P Field mustard nucleus 16.18 25.66
KRH74373 Soybean mitochondrion 25.31 25.58
GSMUA_Achr4P19000_001 Banana nucleus 22.2 25.54
GSMUA_Achr8P14660_001 Banana cytosol, endoplasmic reticulum, nucleus 28.63 25.09
TraesCS5B01G557500.2 Wheat nucleus 30.08 25.09
Bra024609.1-P Field mustard cytoskeleton, cytosol, nucleus 15.98 25.0
TraesCS4A01G321300.1 Wheat nucleus 29.46 24.96
GSMUA_Achr2P18060_001 Banana nucleus 29.46 24.7
TraesCS5D01G551800.3 Wheat nucleus 29.46 24.57
HORVU5Hr1G124010.1 Barley nucleus 29.46 24.52
Bra012380.1-P Field mustard cytosol 15.35 23.87
KXG38822 Sorghum nucleus 29.25 23.7
EER90487 Sorghum nucleus 28.01 23.56
Os10t0577800-01 Rice nucleus 28.84 23.52
TraesCS1A01G195400.4 Wheat cytosol 28.42 23.14
TraesCS1D01G199200.1 Wheat cytosol, nucleus, plastid 28.42 23.14
HORVU0Hr1G014460.1 Barley nucleus 27.59 23.05
Os03t0854800-03 Rice nucleus 27.8 22.95
TraesCS1B01G210300.4 Wheat peroxisome 28.01 22.92
HORVU1Hr1G050960.7 Barley nucleus 28.22 22.33
Zm00001d030110_P001 Maize mitochondrion, nucleus 27.39 22.15
Zm00001d014423_P002 Maize nucleus 27.59 21.7
Bra029254.1-P Field mustard cytosol 13.49 21.45
Bra010096.1-P Field mustard nucleus 13.49 20.77
Zm00001d012821_P003 Maize extracellular, vacuole 27.18 19.97
Protein Annotations
EnsemblPlants:Bra023252.1EnsemblPlants:Bra023252.1-PEnsemblPlantsGene:Bra023252Gene3D:3.90.228.10GO:GO:0003674GO:GO:0003824
GO:GO:0003950GO:GO:0016740GO:GO:0016757InterPro:IPR012317InterPro:Poly(ADP-ribose)pol_cat_domInterPro:RST
PANTHER:PTHR32263PANTHER:PTHR32263:SF4PFAM:PF00644PFAM:PF12174PFscan:PS51059SEG:seg
SUPFAM:SSF56399UniParc:UPI00025422E4UniProt:M4E3A1MapMan:35.1::
Description
AT1G32230 (E=7e-211) RCD1, CEO, CEO1, ATP8 | RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding
Coordinates
chrA09:-:20223502..20225770
Molecular Weight (calculated)
54233.6 Da
IEP (calculated)
6.385
GRAVY (calculated)
-0.449
Length
482 amino acids
Sequence
(BLAST)
001: METKIVKVLD SRREDGFGKK RKRAASYAAY VTGVSCAKLQ DVPPPNPQSQ VPDKRRKLEG AYENLSGKSL VRYYSYFKKT GIAKRVMIYE KGDWNDLPDP
101: VICAIRTELN EKRAAIEFEW CAQHFLLDFL HMHRLDLETG AKTPLAWIDI GGKCFFPEIY ESDERNDCCN HKCVEYSKHY VPHDIKLRLE IDVNAGEPRL
201: NLEECSDESG DSMDDDPAED SCSRRIEPAV SKWDETDGIA VSGVKPAGAE GLDKDAVKKM FAVGTASLGH VAVLDVGRFS SEIAEARLEL FQKQVEITKK
301: HRGDANVRYA WLPAKREVLS GIMMQGLGVG GAFIRKSMYG VGIHLTAADC PYFSARYCDI DENGVRYMVL CRVIMGNMEL LRGDKAQFFS GGEEYDNGVD
401: DVENPKNYIV WNINMNTHIF PEYVVRFKLS VPHNAEGDMV ARHDNSGVEK KMTRGEFVRK LRGIVGDDLL RSTITALQNQ AS
Best Arabidopsis Sequence Match ( AT1G32230.3 )
(BLAST)
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.