Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra023252.1-P | |
| Bra035511.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | Bra023252.1-P | AT1G32230.1 | 19548978 |
| AT2G16770.1 | Bra035511.1-P | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47478 | Canola | nucleus | 96.65 | 95.85 |
| Bra013048.1-P | Field mustard | nucleus | 82.01 | 82.01 |
| AT2G16770.1 | Thale cress | nucleus | 80.75 | 77.51 |
| Bra034668.1-P | Field mustard | nucleus | 66.11 | 61.96 |
| Bra011580.1-P | Field mustard | nucleus | 58.58 | 60.61 |
| Solyc01g111580.2.1 | Tomato | nucleus | 63.6 | 56.3 |
| PGSC0003DMT400015830 | Potato | nucleus | 64.02 | 56.25 |
| KRH24316 | Soybean | nucleus | 62.76 | 55.35 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 62.76 | 55.35 |
| KRH29295 | Soybean | nucleus | 62.34 | 55.19 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 38.08 | 51.12 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 39.75 | 50.53 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 41.0 | 50.26 |
| PGSC0003DMT400031184 | Potato | nucleus | 54.39 | 50.19 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 36.4 | 49.43 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 39.75 | 48.47 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 41.42 | 46.26 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 36.82 | 45.83 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 47.7 | 45.6 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 38.08 | 45.27 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 48.12 | 45.1 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 51.88 | 45.09 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 22.59 | 44.63 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 38.08 | 44.61 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 46.86 | 44.27 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 50.63 | 44.0 |
| Zm00001d014795_P001 | Maize | nucleus | 50.63 | 43.84 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 47.7 | 43.68 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 48.54 | 43.61 |
| Os06t0716800-01 | Rice | nucleus | 49.37 | 43.38 |
| EER90398 | Sorghum | nucleus | 49.37 | 43.22 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 47.28 | 42.64 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 53.97 | 42.43 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 33.89 | 41.97 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 46.03 | 40.89 |
| Bra033464.1-P | Field mustard | nucleus | 33.89 | 39.9 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 47.28 | 38.57 |
| Zm00001d036400_P001 | Maize | nucleus | 28.03 | 37.02 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 49.79 | 35.84 |
| Bra006886.1-P | Field mustard | extracellular | 22.18 | 35.1 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 41.84 | 32.68 |
| HORVU1Hr1G072090.1 | Barley | plastid | 22.18 | 31.18 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 41.42 | 30.56 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | EnsemblPlantsGene:Bra037290 | EnsemblPlants:Bra037290.1 | EnsemblPlants:Bra037290.1-P |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 | UniProt:M4F879 | PFAM:PF07716 |
| PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0002541D91 |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
AT2G16770 (E=2e-090) | DNA binding / transcription factor
Coordinates
chrA09:+:4504136..4504855
Molecular Weight (calculated)
26219.7 Da
IEP (calculated)
5.627
GRAVY (calculated)
-0.774
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDDGELEFP PSSSSMDSFL EELLKDSHAC THTHTCNPPG PENTHTHTCL HVHTKILPAA QSDDKETTDD TSESSGKRSK KRPSGNREAV RKYREKKKAK
101: AASLEDEVLR LRAVNNQLMK RLQGQAALEA EVTRLKCLLV DIRGRIEGEI GAFPYQKPQP FSYRMQPCNM PCDVDDLYCL QNGNSGEGIL MNGQGLNGCE
201: FDQLQCLGDQ NLAGCSNGNG TFDVDASGAN KSKGETLTP
101: AASLEDEVLR LRAVNNQLMK RLQGQAALEA EVTRLKCLLV DIRGRIEGEI GAFPYQKPQP FSYRMQPCNM PCDVDDLYCL QNGNSGEGIL MNGQGLNGCE
201: FDQLQCLGDQ NLAGCSNGNG TFDVDASGAN KSKGETLTP
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.