Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G530300.1 | Wheat | nucleus | 90.2 | 90.91 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 85.88 | 87.6 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 82.75 | 80.84 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 62.75 | 74.77 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 34.51 | 72.73 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 64.31 | 61.89 |
| Os06t0716800-01 | Rice | nucleus | 63.53 | 59.56 |
| EER90398 | Sorghum | nucleus | 61.96 | 57.88 |
| Zm00001d014795_P001 | Maize | nucleus | 61.96 | 57.25 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 38.82 | 56.25 |
| HORVU1Hr1G072090.1 | Barley | plastid | 37.25 | 55.88 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 41.96 | 52.45 |
| Zm00001d036400_P001 | Maize | nucleus | 35.29 | 49.72 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 52.55 | 48.73 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 52.55 | 48.73 |
| Bra037290.1-P | Field mustard | nucleus | 45.1 | 48.12 |
| CDY47478 | Canola | nucleus | 44.71 | 47.3 |
| CDY26786 | Canola | nucleus | 43.92 | 46.86 |
| CDY02237 | Canola | nucleus | 42.75 | 45.61 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 48.24 | 45.39 |
| AT2G16770.1 | Thale cress | nucleus | 44.31 | 45.38 |
| Bra013048.1-P | Field mustard | nucleus | 42.35 | 45.19 |
| CDX89748 | Canola | nucleus | 43.92 | 45.16 |
| AT4G35040.2 | Thale cress | nucleus | 45.49 | 44.44 |
| CDY17503 | Canola | nucleus | 44.31 | 44.31 |
| Bra034668.1-P | Field mustard | nucleus | 44.31 | 44.31 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 54.51 | 42.9 |
| Bra011580.1-P | Field mustard | nucleus | 38.43 | 42.42 |
| PGSC0003DMT400015830 | Potato | nucleus | 45.1 | 42.28 |
| Solyc01g111580.2.1 | Tomato | nucleus | 44.71 | 42.22 |
| CDX76308 | Canola | nucleus | 44.31 | 41.39 |
| CDY52654 | Canola | nucleus | 38.43 | 41.18 |
| TraesCS1B01G323600.1 | Wheat | nucleus | 36.86 | 41.05 |
| KRH29295 | Soybean | nucleus | 42.75 | 40.37 |
| KRH24316 | Soybean | nucleus | 42.75 | 40.22 |
| CDX69107 | Canola | nucleus | 41.57 | 39.11 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 50.59 | 38.86 |
| PGSC0003DMT400031184 | Potato | nucleus | 38.82 | 38.22 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 38.82 | 32.57 |
| TraesCS3B01G360900.1 | Wheat | endoplasmic reticulum | 32.16 | 32.41 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G447900.1 | EnsemblPlantsGene:TraesCS7B01G447900 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | PFAM:PF07716 | SEG:seg | SMART:SM00338 |
| SUPFAM:SSF57959 | TIGR:cd14686 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | : | : |
Description
No Description!
Coordinates
chr7B:+:710990122..710993383
Molecular Weight (calculated)
27441.3 Da
IEP (calculated)
5.897
GRAVY (calculated)
-0.515
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGDIDFSN PETFLCEAMG NDPPASCSMG TYFDDILNGD ADHLACTHTH TCNPPVHDLA HHTHTCVHVH TKILSASDDA AETSESLPEG GGGASKKQRP
101: SGNRAAVRKY REKKKAHTAL LEEEVAHLKA VNQQLVKKLQ SHSALEAEVA RLRCLLVDIR GRIEGEIGTF PYQRTVKGND FVDQGSFLGG AQVMNSCDFR
201: CNDQLYCNPG MQQARTMEDD GVMSGQVLGQ GAGDSMGCVK PGSLNPPGCR GGQML
101: SGNRAAVRKY REKKKAHTAL LEEEVAHLKA VNQQLVKKLQ SHSALEAEVA RLRCLLVDIR GRIEGEIGTF PYQRTVKGND FVDQGSFLGG AQVMNSCDFR
201: CNDQLYCNPG MQQARTMEDD GVMSGQVLGQ GAGDSMGCVK PGSLNPPGCR GGQML
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.