Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14830_001 | Banana | nucleus | 60.24 | 72.73 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 59.34 | 71.64 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 28.92 | 53.93 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 30.42 | 53.72 |
| Os06t0716800-01 | Rice | nucleus | 43.67 | 53.31 |
| Zm00001d014795_P001 | Maize | nucleus | 43.98 | 52.9 |
| EER90398 | Sorghum | nucleus | 43.37 | 52.75 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 42.77 | 52.4 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 38.86 | 51.6 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 40.96 | 51.32 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 27.11 | 51.14 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 40.96 | 51.13 |
| Bra013048.1-P | Field mustard | nucleus | 36.45 | 50.63 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 38.55 | 50.59 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 38.86 | 50.59 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 18.37 | 50.41 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 28.92 | 50.0 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 32.23 | 50.0 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 40.36 | 49.81 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 39.16 | 49.81 |
| CDY26786 | Canola | nucleus | 35.84 | 49.79 |
| Bra037290.1-P | Field mustard | nucleus | 35.84 | 49.79 |
| CDY02237 | Canola | nucleus | 35.84 | 49.79 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 29.22 | 49.74 |
| AT4G35040.2 | Thale cress | nucleus | 38.86 | 49.43 |
| CDY47478 | Canola | nucleus | 35.84 | 49.38 |
| KRH29295 | Soybean | nucleus | 40.06 | 49.26 |
| CDX89748 | Canola | nucleus | 36.75 | 49.19 |
| Solyc01g111580.2.1 | Tomato | nucleus | 39.76 | 48.89 |
| KRH24316 | Soybean | nucleus | 39.76 | 48.71 |
| PGSC0003DMT400015830 | Potato | nucleus | 39.76 | 48.53 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 28.61 | 48.47 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 29.22 | 48.26 |
| AT2G16770.1 | Thale cress | nucleus | 35.84 | 47.79 |
| Bra011580.1-P | Field mustard | nucleus | 33.13 | 47.62 |
| CDY17503 | Canola | nucleus | 36.45 | 47.45 |
| Bra034668.1-P | Field mustard | nucleus | 36.14 | 47.06 |
| CDY52654 | Canola | nucleus | 33.43 | 46.64 |
| GSMUA_Achr4P00320_001 | Banana | nucleus | 28.61 | 46.57 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 40.96 | 46.42 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 28.31 | 46.08 |
| Zm00001d036400_P001 | Maize | nucleus | 24.7 | 45.3 |
| PGSC0003DMT400031184 | Potato | nucleus | 34.94 | 44.79 |
| CDX76308 | Canola | nucleus | 36.14 | 43.96 |
| CDX69107 | Canola | nucleus | 35.24 | 43.17 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 24.7 | 42.49 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 37.05 | 40.46 |
| GSMUA_Achr4P10150_001 | Banana | nucleus | 26.2 | 38.33 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 33.13 | 35.95 |
| HORVU1Hr1G072090.1 | Barley | plastid | 17.77 | 34.71 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 31.93 | 32.72 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr7G03840_001 | EnsemblPlants:GSMUA_Achr7P03840_001 | EnsemblPlants:GSMUA_Achr7T03840_001 | InterPro:IPR004827 | UniProt:M0TEH4 | PFAM:PF07716 |
| PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000295EF50 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
E2F-related protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G03840_001]
Coordinates
chr7:+:2989274..2992485
Molecular Weight (calculated)
36040.5 Da
IEP (calculated)
6.774
GRAVY (calculated)
-0.481
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSRHRYAL SSPSNPPPSL PFRALALALP PSFFHVIPPI ACKPPTPHLR LCLLPSPVIM DDGEPDLSNP EVFSTPGAGE DLPSSCSMDS FFDKILNDGH
101: TCTHTHTCNP PGPNLSHTHT CFHVHTKILS SPPDETAESV EKSDSSKKRP CNNREAVRKY REKKKAHAAS LEEEAAHLRA INQQLFKRLQ NQAALEAEIA
201: RLKCLLVDLR GRIEGEIGPF PYHKPVKGSG DFVSNVTQGN MLAGAQVLNP CNFHCDDQVN WFYPGMHGKD VGETGVFDDQ GLGVCEIGNM QCMGSSTSGS
301: QDFASCKSKT AKPVDCSSNA TRLEGARAPE DS
101: TCTHTHTCNP PGPNLSHTHT CFHVHTKILS SPPDETAESV EKSDSSKKRP CNNREAVRKY REKKKAHAAS LEEEAAHLRA INQQLFKRLQ NQAALEAEIA
201: RLKCLLVDLR GRIEGEIGPF PYHKPVKGSG DFVSNVTQGN MLAGAQVLNP CNFHCDDQVN WFYPGMHGKD VGETGVFDDQ GLGVCEIGNM QCMGSSTSGS
301: QDFASCKSKT AKPVDCSSNA TRLEGARAPE DS
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.