Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT2G16770.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02237 | Canola | nucleus | 89.11 | 92.47 |
| CDY47478 | Canola | nucleus | 85.89 | 88.38 |
| CDY26786 | Canola | nucleus | 85.08 | 88.28 |
| AT2G16770.1 | Thale cress | nucleus | 80.65 | 80.32 |
| CDY17503 | Canola | nucleus | 65.32 | 63.53 |
| CDY52654 | Canola | nucleus | 57.66 | 60.08 |
| CDX76308 | Canola | nucleus | 64.92 | 58.97 |
| KRH24316 | Soybean | nucleus | 62.9 | 57.56 |
| KRH29295 | Soybean | nucleus | 62.1 | 57.04 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 62.1 | 56.83 |
| Solyc01g111580.2.1 | Tomato | nucleus | 61.29 | 56.3 |
| PGSC0003DMT400015830 | Potato | nucleus | 61.69 | 56.25 |
| CDX69107 | Canola | nucleus | 61.29 | 56.09 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 37.1 | 51.69 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 39.11 | 51.6 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 39.52 | 50.26 |
| PGSC0003DMT400031184 | Potato | nucleus | 52.02 | 49.81 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 34.68 | 48.86 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 38.31 | 48.47 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 35.48 | 45.83 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 22.18 | 45.45 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 36.69 | 45.27 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 37.1 | 45.1 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 50.0 | 45.09 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 50.0 | 45.09 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 38.71 | 44.86 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 45.56 | 44.66 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 44.76 | 44.4 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 45.16 | 43.92 |
| Zm00001d014795_P001 | Maize | nucleus | 48.39 | 43.48 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 46.37 | 43.23 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 44.76 | 42.53 |
| EER90398 | Sorghum | nucleus | 46.77 | 42.49 |
| Os06t0716800-01 | Rice | nucleus | 46.37 | 42.28 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 51.61 | 42.11 |
| CDY60641 | Canola | nucleus | 31.85 | 42.02 |
| CDY23178 | Canola | nucleus | 31.85 | 42.02 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 32.66 | 41.97 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 44.76 | 41.89 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 44.76 | 41.26 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 45.56 | 38.57 |
| Zm00001d036400_P001 | Maize | nucleus | 27.02 | 37.02 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 49.19 | 36.75 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 39.52 | 32.03 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 39.92 | 30.56 |
| HORVU1Hr1G072090.1 | Barley | plastid | 20.56 | 30.0 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | GO:A0A078DRD6 | EnsemblPlants:CDX89748 | ProteinID:CDX89748 |
| ProteinID:CDX89748.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00150182001 | InterPro:IPR004827 |
| PFAM:PF07716 | PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 | SUPFAM:SSF57959 |
| UniParc:UPI0004EAE3E1 | InterPro:bZIP | SEG:seg | : | : | : |
Description
BnaC03g46620D
Coordinates
chrLK031860:+:1448719..1450032
Molecular Weight (calculated)
26975.6 Da
IEP (calculated)
6.698
GRAVY (calculated)
-0.698
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGEVEFPL SSSSMDSFFD ELLRDSHACT HTHTCNPPGP ENTHTHTCLH VHTKILPAQA EDKEATDDTS ESSGNKSKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLR AVNSQLMKRL QGQAALEAEV TRLKCLLVDI RGRIEGEIGA FPYQKPVAPN AHFSYTMQPC NNMPCGVDNN LYCFQDGNSG EGALMNGQGL
201: NGCEFDQLQC LDGDQNLAGC SNGNGTFGVN ASGVANKRKR GTPASKAV
101: SLEDEVMRLR AVNSQLMKRL QGQAALEAEV TRLKCLLVDI RGRIEGEIGA FPYQKPVAPN AHFSYTMQPC NNMPCGVDNN LYCFQDGNSG EGALMNGQGL
201: NGCEFDQLQC LDGDQNLAGC SNGNGTFGVN ASGVANKRKR GTPASKAV
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.