Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 7
- endoplasmic reticulum 6
- vacuole 5
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc08g005270.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G16770.1 | Solyc08g005270.2.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400031184 | Potato | nucleus | 78.62 | 92.28 |
| Solyc01g111580.2.1 | Tomato | nucleus | 54.61 | 61.48 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 50.99 | 57.2 |
| AT2G16770.1 | Thale cress | nucleus | 44.41 | 54.22 |
| Bra037290.1-P | Field mustard | nucleus | 42.43 | 53.97 |
| CDY26786 | Canola | nucleus | 42.11 | 53.56 |
| CDY47478 | Canola | nucleus | 42.43 | 53.53 |
| KRH24316 | Soybean | nucleus | 47.37 | 53.14 |
| Bra013048.1-P | Field mustard | nucleus | 41.12 | 52.3 |
| KRH29295 | Soybean | nucleus | 46.05 | 51.85 |
| CDX89748 | Canola | nucleus | 42.11 | 51.61 |
| CDY02237 | Canola | nucleus | 40.46 | 51.46 |
| AT4G35040.2 | Thale cress | nucleus | 44.08 | 51.34 |
| CDY17503 | Canola | nucleus | 41.45 | 49.41 |
| Bra034668.1-P | Field mustard | nucleus | 41.45 | 49.41 |
| Bra011580.1-P | Field mustard | nucleus | 36.18 | 47.62 |
| CDY52654 | Canola | nucleus | 36.84 | 47.06 |
| CDX69107 | Canola | nucleus | 41.45 | 46.49 |
| CDX76308 | Canola | nucleus | 41.12 | 45.79 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 41.12 | 45.45 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 25.99 | 44.38 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 40.13 | 44.36 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 26.97 | 43.62 |
| Os06t0716800-01 | Rice | nucleus | 37.5 | 41.91 |
| EER90398 | Sorghum | nucleus | 37.5 | 41.76 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 36.51 | 41.73 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 35.86 | 41.13 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 26.32 | 41.03 |
| Zm00001d014795_P001 | Maize | nucleus | 37.17 | 40.94 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 23.68 | 40.91 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 36.18 | 40.89 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 33.55 | 40.32 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 25.99 | 40.31 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 25.33 | 40.1 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 32.57 | 39.6 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 32.57 | 38.82 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 27.3 | 38.78 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 25.99 | 38.73 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 33.22 | 38.7 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 25.33 | 38.31 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 36.51 | 37.88 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 23.68 | 37.31 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 14.8 | 37.19 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 40.46 | 37.05 |
| Zm00001d036400_P001 | Maize | nucleus | 20.72 | 34.81 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 30.26 | 30.07 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 28.29 | 26.54 |
| HORVU1Hr1G072090.1 | Barley | plastid | 14.8 | 26.47 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| UniProt:K4D1E5 | PFAM:PF07716 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 | SUPFAM:SSF57959 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc10g055550.1 | EnsemblPlants:Solyc10g055550.1.1 | UniParc:UPI00027695E2 | InterPro:bZIP | SEG:seg |
Description
No Description!
Coordinates
chr10:+:56914380..56915961
Molecular Weight (calculated)
33484.9 Da
IEP (calculated)
7.792
GRAVY (calculated)
-0.416
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLFLLFVY LTYSSLIDWI AKYHLNSSLL NACCLPAGSI STMDDMELEF SSQQVLSSST FGEIPESSPM NKRFNEILTD VHACIHAHTC NPPGPDNSHT
101: HTCYHVHTKV VTPPRDDTTA ESTAANVGKK RSLSNKEAVR KYCEKKKARV ASLEEEVVRL RDINQQLLNR LQGQAVLEAE VSRLKCLLVD IRGRIAGEIG
201: SFPYHKPMEG ADVYQNLRGT YVMNPCNLQC DDQVYCLQPN SEESNGQGLN SCGFETLQCS SSQGLKEVPG CALGFGTPTA NASRGNKKKR TGGKRAHNGK
301: PVNC
101: HTCYHVHTKV VTPPRDDTTA ESTAANVGKK RSLSNKEAVR KYCEKKKARV ASLEEEVVRL RDINQQLLNR LQGQAVLEAE VSRLKCLLVD IRGRIAGEIG
201: SFPYHKPMEG ADVYQNLRGT YVMNPCNLQC DDQVYCLQPN SEESNGQGLN SCGFETLQCS SSQGLKEVPG CALGFGTPTA NASRGNKKKR TGGKRAHNGK
301: PVNC
001: MDDGELEFSN SNMGGELPSC SMDSFFDELL RDSHACTHTH TCNPPGPENT HTHTCLHVHT KILPDKVSTD DTSESSGKKR PLGNREAVRK YREKKKAKAA
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
101: SLEDEVMRLK AVNNQLLKRL QGQAALEAEV TRLKCLLVDI RGRIDGEIGA FPYQKPAVTN VPYSYMMHPC NMQCDVDNLY CLQNGNNGEG ASMNEQGLNG
201: CEFDQLECLA NQNLAGKEIP VCSNGIGTFT VNGSGVNKRK GEPRAAKAV
Arabidopsis Description
BZIP23Basic leucine zipper 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.