Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P14830_001 | Banana | nucleus | 82.55 | 82.55 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 71.64 | 59.34 |
| TraesCS5D01G025800.1 | Wheat | nucleus | 56.0 | 57.89 |
| TraesCS5B01G017700.1 | Wheat | nucleus | 55.27 | 57.36 |
| Os06t0716800-01 | Rice | nucleus | 56.73 | 57.35 |
| HORVU5Hr1G005780.2 | Barley | nucleus | 54.18 | 55.39 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 54.18 | 54.98 |
| EER90398 | Sorghum | nucleus | 54.55 | 54.95 |
| Zm00001d014795_P001 | Maize | nucleus | 54.91 | 54.71 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 37.09 | 54.26 |
| TraesCS7D01G518200.1 | Wheat | nucleus | 34.91 | 53.93 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 48.73 | 53.6 |
| TraesCS7B01G447900.1 | Wheat | nucleus | 48.73 | 52.55 |
| CDY47478 | Canola | nucleus | 45.82 | 52.28 |
| TraesCS7A01G530300.1 | Wheat | nucleus | 48.0 | 52.17 |
| Bra037290.1-P | Field mustard | nucleus | 45.09 | 51.88 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 40.36 | 51.87 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 36.73 | 51.79 |
| KRH24316 | Soybean | nucleus | 50.91 | 51.66 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 54.91 | 51.54 |
| Bra013048.1-P | Field mustard | nucleus | 44.73 | 51.46 |
| CDY26786 | Canola | nucleus | 44.36 | 51.05 |
| CDY02237 | Canola | nucleus | 44.36 | 51.05 |
| TraesCS7D01G519200.1 | Wheat | nucleus | 36.36 | 51.02 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 48.36 | 50.96 |
| Solyc01g111580.2.1 | Tomato | nucleus | 49.82 | 50.74 |
| KRH29295 | Soybean | nucleus | 49.45 | 50.37 |
| PGSC0003DMT400015830 | Potato | nucleus | 49.82 | 50.37 |
| TraesCS7B01G448000.1 | Wheat | nucleus | 32.0 | 50.0 |
| CDX89748 | Canola | nucleus | 45.09 | 50.0 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 21.82 | 49.59 |
| AT4G35040.2 | Thale cress | nucleus | 46.55 | 49.04 |
| CDY17503 | Canola | nucleus | 45.45 | 49.02 |
| Bra034668.1-P | Field mustard | nucleus | 45.45 | 49.02 |
| AT2G16770.1 | Thale cress | nucleus | 44.36 | 49.0 |
| Bra011580.1-P | Field mustard | nucleus | 41.09 | 48.92 |
| CDY52654 | Canola | nucleus | 41.45 | 47.9 |
| PGSC0003DMT400031184 | Potato | nucleus | 44.73 | 47.49 |
| HORVU7Hr1G117010.1 | Barley | nucleus | 33.09 | 47.4 |
| HORVU7Hr1G117170.1 | Barley | nucleus | 34.55 | 47.26 |
| TraesCS7B01G449200.1 | Wheat | nucleus | 34.91 | 47.06 |
| Zm00001d036400_P001 | Maize | nucleus | 30.91 | 46.96 |
| TraesCS7D01G413100.1 | Wheat | nucleus | 32.0 | 45.6 |
| CDX76308 | Canola | nucleus | 45.09 | 45.42 |
| CDX69107 | Canola | nucleus | 43.64 | 44.28 |
| GSMUA_Achr4P00320_001 | Banana | nucleus | 32.73 | 44.12 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 45.45 | 41.12 |
| GSMUA_Achr4P10150_001 | Banana | nucleus | 31.64 | 38.33 |
| HORVU1Hr1G072090.1 | Barley | plastid | 22.55 | 36.47 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 39.27 | 35.29 |
| TraesCS7B01G321300.1 | Wheat | nucleus | 37.82 | 32.1 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr3G00670_001 | EnsemblPlants:GSMUA_Achr3P00670_001 | EnsemblPlants:GSMUA_Achr3T00670_001 | InterPro:IPR004827 | UniProt:M0SAN5 | PFAM:PF07716 |
| PFscan:PS50217 | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0002960211 |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
E2F-related protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G00670_001]
Coordinates
chr3:-:521025..524760
Molecular Weight (calculated)
29398.2 Da
IEP (calculated)
6.030
GRAVY (calculated)
-0.537
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGDLDFSN PEVFSGPNAG DLPSGCSMDS VFDNIFNDSQ QHTCTHTHTC NPPGPDLSHT HTCFHVHTKI LSAPADETAE SAGKSSPTKK RSCGNREAVR
101: KYREKKKAHA ASLEEEVAQL RAINQQLMKR LQSQAALEAE VARLRCLLVD LRGRIEGEIG SFPYQRTVKG SGDFVSNVSQ ANMLGDAEVL NSCGFRCDDQ
201: VSCLYPGMQG RNVGENGAFN GQGVQACEIG NIQCMGSSTS GYKDCFGCGN GAATPVDCSS NAKKIGGAHA TKEDL
101: KYREKKKAHA ASLEEEVAQL RAINQQLMKR LQSQAALEAE VARLRCLLVD LRGRIEGEIG SFPYQRTVKG SGDFVSNVSQ ANMLGDAEVL NSCGFRCDDQ
201: VSCLYPGMQG RNVGENGAFN GQGVQACEIG NIQCMGSSTS GYKDCFGCGN GAATPVDCSS NAKKIGGAHA TKEDL
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.