Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G447900.1 | Wheat | nucleus | 90.91 | 90.2 |
| TraesCS7D01G518100.1 | Wheat | nucleus | 88.93 | 90.0 |
| HORVU7Hr1G117020.4 | Barley | nucleus | 86.96 | 84.29 |
| HORVU6Hr1G002780.1 | Barley | nucleus | 37.94 | 79.34 |
| HORVU5Hr1G116780.1 | Barley | nucleus | 65.22 | 77.1 |
| TraesCS7A01G530400.1 | Wheat | nucleus | 45.85 | 61.7 |
| TraesCS7A01G531800.1 | Wheat | nucleus | 45.85 | 59.49 |
| EER90398 | Sorghum | nucleus | 62.85 | 58.24 |
| Os06t0716800-01 | Rice | nucleus | 62.45 | 58.09 |
| Zm00001d014795_P001 | Maize | nucleus | 62.45 | 57.25 |
| HORVU1Hr1G072090.1 | Barley | plastid | 37.94 | 56.47 |
| TraesCS5A01G020700.1 | Wheat | nucleus | 64.82 | 55.97 |
| Zm00001d036400_P001 | Maize | nucleus | 36.76 | 51.38 |
| GSMUA_Achr1P14830_001 | Banana | nucleus | 52.57 | 48.36 |
| GSMUA_Achr3P00670_001 | Banana | nucleus | 52.17 | 48.0 |
| Bra037290.1-P | Field mustard | nucleus | 44.27 | 46.86 |
| CDY47478 | Canola | nucleus | 43.87 | 46.06 |
| CDY02237 | Canola | nucleus | 43.48 | 46.03 |
| TraesCS7A01G420400.1 | Wheat | nucleus | 55.34 | 45.75 |
| Bra013048.1-P | Field mustard | nucleus | 43.08 | 45.61 |
| CDY26786 | Canola | nucleus | 43.08 | 45.61 |
| CDX89748 | Canola | nucleus | 44.66 | 45.56 |
| AT2G16770.1 | Thale cress | nucleus | 44.66 | 45.38 |
| VIT_03s0038g02420.t01 | Wine grape | nucleus | 48.22 | 45.02 |
| AT4G35040.2 | Thale cress | nucleus | 43.48 | 42.15 |
| CDY17503 | Canola | nucleus | 42.29 | 41.96 |
| Bra034668.1-P | Field mustard | nucleus | 42.29 | 41.96 |
| PGSC0003DMT400015830 | Potato | nucleus | 45.06 | 41.91 |
| Solyc01g111580.2.1 | Tomato | nucleus | 44.66 | 41.85 |
| Bra011580.1-P | Field mustard | nucleus | 37.55 | 41.13 |
| TraesCS1A01G311900.1 | Wheat | nucleus | 36.36 | 40.53 |
| KRH29295 | Soybean | nucleus | 42.69 | 40.0 |
| CDY52654 | Canola | nucleus | 37.55 | 39.92 |
| KRH24316 | Soybean | nucleus | 42.69 | 39.85 |
| CDX76308 | Canola | nucleus | 42.29 | 39.19 |
| TraesCS3A01G330800.1 | Wheat | nucleus | 32.81 | 38.78 |
| PGSC0003DMT400031184 | Potato | nucleus | 39.53 | 38.61 |
| GSMUA_Achr7P03840_001 | Banana | golgi, mitochondrion, nucleus, plastid | 50.59 | 38.55 |
| CDX69107 | Canola | nucleus | 40.32 | 37.64 |
| Solyc10g055550.1.1 | Tomato | plasma membrane | 40.32 | 33.55 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G530300.1 | EnsemblPlantsGene:TraesCS7A01G530300 | Gene3D:1.20.5.170 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR004827 |
| InterPro:bZIP | PANTHER:PTHR23334 | PANTHER:PTHR23334:SF25 | PFAM:PF07716 | SEG:seg | SMART:SM00338 |
| SUPFAM:SSF57959 | TIGR:cd14686 | MapMan:15.5.4.1 | MapMan:15.5.4.3 | : | : |
Description
No Description!
Coordinates
chr7A:+:709638948..709639709
Molecular Weight (calculated)
27368.2 Da
IEP (calculated)
6.067
GRAVY (calculated)
-0.509
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDGDIDFSN PQTFLCEAMG NDPPASCSMG SYFDDILNSD ADHLACTHTH TCNPPVHDLA HHTHTCVHVH TKILSASDDA AETSESLPEG GATKKQRPSG
101: NRAAVRKYRE KKKAHTALLE EEVAHLKAVN QQLVKKLQSH SALEAEVARL RCLLVDIRGR IEGEIGTFPY QRTVKSNDFV DQGSFLGGAQ VMNSCDFRCN
201: DQLYCNPGIQ QARTMEDDGV MSGQVLGQGA GDSMGCVKPG SLNPPGCRGG QML
101: NRAAVRKYRE KKKAHTALLE EEVAHLKAVN QQLVKKLQSH SALEAEVARL RCLLVDIRGR IEGEIGTFPY QRTVKSNDFV DQGSFLGGAQ VMNSCDFRCN
201: DQLYCNPGIQ QARTMEDDGV MSGQVLGQGA GDSMGCVKPG SLNPPGCRGG QML
001: MEDGELDFSN QEVFSSSEMG ELPPSNCSMD SFFDGLLMDT NAACTHTHTC NPTGPENTHT HTCFHVHTKI LPDESDEKVS TDDTAESCGK KGEKRPLGNR
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
101: EAVRKYREKK KAKAASLEDE VARLRAVNQQ LVKRLQNQAT LEAEVSRLKC LLVDLRGRID GEIGSFPYQK PMAANIPSFS HMMNPCNVQC DDEVYCPQNV
201: FGVNSQEGAS INDQGLSGCD FDQLQCMANQ NLNGNGNGSF SNVNTSVSNK RKGGHRASRA V
Arabidopsis Description
BZIP19Basic leucine zipper 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8VY76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.