Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G195400.4 | Wheat | cytosol | 97.64 | 97.64 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 97.13 | 97.62 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 93.58 | 90.97 |
| Os10t0577800-01 | Rice | nucleus | 67.23 | 67.34 |
| KXG38822 | Sorghum | nucleus | 64.86 | 64.54 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 64.53 | 64.09 |
| Zm00001d014423_P002 | Maize | nucleus | 64.53 | 62.32 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 41.72 | 43.64 |
| GSMUA_Achr11P... | Banana | nucleus | 38.18 | 43.46 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 42.06 | 43.3 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 38.85 | 41.82 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 27.2 | 38.42 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 37.16 | 38.06 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 31.08 | 34.52 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 34.8 | 33.07 |
| Solyc08g005270.2.1 | Tomato | nucleus | 31.93 | 31.5 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 30.91 | 31.39 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 30.57 | 31.05 |
| PGSC0003DMT400038368 | Potato | nucleus | 30.74 | 30.9 |
| CDY60257 | Canola | cytosol | 17.06 | 30.89 |
| Solyc08g076420.2.1 | Tomato | nucleus | 30.74 | 30.49 |
| PGSC0003DMT400043197 | Potato | nucleus | 29.39 | 29.29 |
| CDY22597 | Canola | nucleus | 26.52 | 28.86 |
| AT2G35510.3 | Thale cress | cytosol | 27.36 | 28.52 |
| CDY32124 | Canola | nucleus | 25.51 | 28.49 |
| Bra023252.1-P | Field mustard | nucleus | 23.14 | 28.42 |
| AT1G32230.1 | Thale cress | nucleus | 28.21 | 28.35 |
| Bra017317.1-P | Field mustard | nucleus | 25.34 | 28.3 |
| CDY67026 | Canola | nucleus | 26.18 | 28.18 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 24.66 | 27.86 |
| CDY43007 | Canola | nucleus | 27.2 | 27.71 |
| Solyc06g066330.2.1 | Tomato | nucleus | 27.53 | 27.44 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 22.8 | 27.38 |
| CDY31694 | Canola | nucleus | 24.32 | 27.27 |
| Bra035511.1-P | Field mustard | cytosol | 24.83 | 26.34 |
| CDY41739 | Canola | cytosol | 22.8 | 24.55 |
| TraesCS4D01G236400.2 | Wheat | nucleus | 17.4 | 23.46 |
| KRH74373 | Soybean | mitochondrion | 18.41 | 22.85 |
| TraesCS7D01G402500.1 | Wheat | nucleus | 22.13 | 15.01 |
| TraesCS7D01G201500.1 | Wheat | nucleus | 19.76 | 13.27 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G199200.1 | EnsemblPlantsGene:TraesCS1D01G199200 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF10 |
| PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1D:-:281402739..281405486
Molecular Weight (calculated)
66378.2 Da
IEP (calculated)
8.283
GRAVY (calculated)
-0.489
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMNEKVLA KCGQNIVSLK RKWDSPAAYH ADACHTSQSH QHPTGNSDIR LYVGEDRKAN IACHFNKQIL QSYQNYMTSA SPKRILLRQS GSWKEFPEKI
101: VKLAQVDFRT KKTITEVGYQ NQLFLLDFVH MTFIDSKSGL QRPIAWIDDN GRRYFPEVLI EDQIVYRRKD LGNGDHVYVR AEPNGAREIN DRYGASESSA
201: ESSNFESSTE EVSSAKRVRA EKGIIRKINC DHRETVGENE PHTLLPAVFS CQPQQDKLGG QSRAQGTTSV VQKMLLQGMG TAIGSKDIIG IHRTPFLNNY
301: REDRYDLFQK QAEITKSQHG DANVRYAWLP CSKAAVDEMM LNGTLQVKKP TRCPPYGTGV LLAPANCSIN CVNYSDVDEN GIIYVMLCRV VMGNVEIVHH
401: GSKQHQPSNE YFDSGVDDLK NPQHYIVWDM NLNSHIYSEF VVTIKLPSKA KDSLFTQEDC HDSSDASLVL SPSSADSVSQ DMNLEASPAL GGQYEAPMLG
501: GSMAKAPSTP WMPFSMLFAA ISTKLPREKM DMINNCYEEF KAKKISRIDL VKRLRLIVGD RMLVSTIIRL QDKLPPMAKR EAANAPAKAR GQ
101: VKLAQVDFRT KKTITEVGYQ NQLFLLDFVH MTFIDSKSGL QRPIAWIDDN GRRYFPEVLI EDQIVYRRKD LGNGDHVYVR AEPNGAREIN DRYGASESSA
201: ESSNFESSTE EVSSAKRVRA EKGIIRKINC DHRETVGENE PHTLLPAVFS CQPQQDKLGG QSRAQGTTSV VQKMLLQGMG TAIGSKDIIG IHRTPFLNNY
301: REDRYDLFQK QAEITKSQHG DANVRYAWLP CSKAAVDEMM LNGTLQVKKP TRCPPYGTGV LLAPANCSIN CVNYSDVDEN GIIYVMLCRV VMGNVEIVHH
401: GSKQHQPSNE YFDSGVDDLK NPQHYIVWDM NLNSHIYSEF VVTIKLPSKA KDSLFTQEDC HDSSDASLVL SPSSADSVSQ DMNLEASPAL GGQYEAPMLG
501: GSMAKAPSTP WMPFSMLFAA ISTKLPREKM DMINNCYEEF KAKKISRIDL VKRLRLIVGD RMLVSTIIRL QDKLPPMAKR EAANAPAKAR GQ
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.