Factsheet for TraesCS2A01G348900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3
TraesCS6A01G326100.1
TraesCS6B01G356400.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	TraesCS1A01G195400.4	AT1G32230.1	11018516
AT1G06040.1	TraesCS1B01G210300.4	AT1G32230.1	11018516
AT1G06040.1	TraesCS1D01G199200.1	AT1G32230.1	11018516
AT1G06040.1	TraesCS4A01G321300.1	AT1G32230.1	11018516
AT1G06040.1	TraesCS5B01G557500.2	AT1G32230.1	11018516
AT1G06040.1	TraesCS5D01G551800.3	AT1G32230.1	11018516
AT1G06040.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT1G06040.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT1G06040.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT1G06040.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT1G06040.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT1G06040.1	TraesCS5D01G551800.3	AT1G32230.1	19548978
AT1G06040.1	TraesCS6A01G326100.1	AT2G32950.1	11226162
AT1G06040.1	TraesCS6B01G356400.1	AT2G32950.1	11226162
AT1G06040.1	TraesCS6D01G305800.1	AT2G32950.1	11226162
AT2G31380.1	TraesCS6A01G326100.1	AT2G32950.1	11226162
AT2G31380.1	TraesCS6B01G356400.1	AT2G32950.1	11226162
AT2G31380.1	TraesCS6D01G305800.1	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	96.85	95.35
TraesCS2B01G367300.2	Wheat	nucleus	95.28	93.8
TraesCS2A01G366100.2	Wheat	nucleus	95.67	92.4
Os04t0493000-01	Rice	cytosol	54.33	75.0
EES12431	Sorghum	nucleus	76.77	72.76
TraesCS6A01G216400.1	Wheat	extracellular	66.93	66.41
GSMUA_Achr9P02360_001	Banana	cytosol	53.94	57.56
KRH29616	Soybean	nucleus	51.57	55.04
PGSC0003DMT400069498	Potato	nucleus	50.39	54.94
Solyc06g073180.2.1	Tomato	nucleus	50.39	54.94
KRH24617	Soybean	nucleus	51.18	54.62
VIT_05s0102g00750.t01	Wine grape	nucleus	51.18	54.39
KRH23214	Soybean	nucleus	50.39	53.56
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	53.15	53.15
CDX86539	Canola	nucleus	50.39	53.11
Bra030635.1-P	Field mustard	nucleus	50.39	53.11
CDY15558	Canola	nucleus	50.0	52.92
CDY06194	Canola	nucleus	48.03	52.14
Bra032441.1-P	Field mustard	nucleus	47.64	51.71
CDY09992	Canola	nucleus	47.64	51.49
Bra015469.1-P	Field mustard	nucleus	48.82	51.03
AT1G06040.1	Thale cress	nucleus	49.21	50.4
CDY19093	Canola	nucleus	45.67	48.54
Bra021734.1-P	Field mustard	nucleus	45.28	47.92
CDY15382	Canola	nucleus	45.28	47.52
AT2G31380.1	Thale cress	nucleus	44.09	47.06
CDY56613	Canola	nucleus	44.88	46.91
Bra018249.1-P	Field mustard	nucleus	44.88	46.91
CDY10800	Canola	nucleus	44.09	46.09
KRH10122	Soybean	nucleus	50.79	32.91
TraesCS6A01G239300.1	Wheat	nucleus	28.35	30.51
TraesCS6A01G143900.1	Wheat	nucleus	24.8	29.44
TraesCS2A01G388500.1	Wheat	nucleus	29.13	28.68
TraesCS5A01G317100.1	Wheat	cytosol	22.44	27.01
TraesCS3A01G139300.1	Wheat	nucleus	33.86	24.64
TraesCS7A01G108400.1	Wheat	nucleus	34.25	24.23
TraesCS7A01G383400.3	Wheat	nucleus	26.77	21.73

Protein Annotations

EnsemblPlants:TraesCS2A01G348900.1	EnsemblPlantsGene:TraesCS2A01G348900	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31832
PANTHER:PTHR31832:SF29	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336	TIGR:cd00021
MapMan:15.5.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:587750786..587751641

Molecular Weight (calculated)

27210.8 Da

IEP (calculated)

4.760

GRAVY (calculated)

-0.302

Length

254 amino acids

Sequence
(BLAST)

001: MRIQCDACEG AAATVVCCAD EAALCARCDV QIHAANKLAS KHQRLPLEAA PGLPRCDVCQ DKPAFVFCVD DRALFCRDCD DSIHVQGTLS ANHQRYIATG
101: IRVGFSSVCS AHADTHPPPS KPKAPPTAAV PRAAPVSAAA QEVPSSPFLP SSGWAVEDLL QFSDYESSDK KGSPSPLGFK ELEWFADIDL FHDDQAPAPK
201: WGRTAAEVPE LFASPQPASN TGFYKAAGAR QSKKARVEMP DDDDEDYLLV PDLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.