CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14801
KRH39574
KRH73341
KRH74370
KRH74373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	KRH39574	AT1G32230.1	11018516
AT1G06040.1	KRH74370	AT1G32230.1	11018516
AT1G06040.1	KRH74373	AT1G32230.1	11018516
AT1G06040.1	KRH39574	AT1G32230.1	19548978
AT1G06040.1	KRH74370	AT1G32230.1	19548978
AT1G06040.1	KRH74373	AT1G32230.1	19548978
AT1G06040.1	KRH14801	AT2G32950.1	11226162
AT1G06040.1	KRH73341	AT2G32950.1	11226162
AT2G31380.1	KRH14801	AT2G32950.1	11226162
AT2G31380.1	KRH73341	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29616	Soybean	nucleus	92.86	92.86
KRH23214	Soybean	nucleus	82.77	82.43
VIT_05s0102g00750.t01	Wine grape	nucleus	72.27	71.97
PGSC0003DMT400069498	Potato	nucleus	65.97	67.38
Solyc06g073180.2.1	Tomato	nucleus	65.97	67.38
Bra032441.1-P	Field mustard	nucleus	63.45	64.53
CDY06194	Canola	nucleus	63.03	64.1
CDX86539	Canola	nucleus	64.71	63.9
CDY09992	Canola	nucleus	63.03	63.83
Bra015469.1-P	Field mustard	nucleus	63.87	62.55
CDY15558	Canola	nucleus	63.03	62.5
AT1G06040.1	Thale cress	nucleus	65.13	62.5
Bra030635.1-P	Field mustard	nucleus	62.6	61.83
GSMUA_Achr9P02360_001	Banana	cytosol	61.34	61.34
CDY19093	Canola	nucleus	59.24	59.0
AT2G31380.1	Thale cress	nucleus	58.4	58.4
Bra021734.1-P	Field mustard	nucleus	58.82	58.33
CDY56613	Canola	nucleus	59.24	58.02
CDY15382	Canola	nucleus	58.4	57.44
Bra018249.1-P	Field mustard	nucleus	58.4	57.2
CDY10800	Canola	nucleus	57.98	56.79
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	59.24	55.51
EES07119	Sorghum	nucleus	58.4	52.85
Zm00001d051018_P002	Maize	extracellular	55.88	52.57
TraesCS6A01G216400.1	Wheat	extracellular	55.46	51.56
EES12431	Sorghum	nucleus	57.98	51.49
TraesCS2A01G348900.1	Wheat	nucleus	54.62	51.18
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	55.04	50.78
TraesCS2B01G367300.2	Wheat	nucleus	55.04	50.78
TraesCS6D01G199200.1	Wheat	extracellular	55.46	50.77
KRH10122	Soybean	nucleus	82.77	50.26
TraesCS2A01G366100.2	Wheat	nucleus	55.46	50.19
TraesCS6B01G246500.1	Wheat	extracellular	54.62	50.0
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	53.78	47.23
Os04t0493000-01	Rice	cytosol	33.19	42.93
KRH21881	Soybean	nucleus	41.18	33.45
KRH37922	Soybean	nucleus	40.34	32.88
KRH51757	Soybean	nucleus	31.09	30.2
KRH61078	Soybean	nucleus	32.77	29.32
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.53	29.02
KRH51476	Soybean	nucleus	28.15	28.76
KRH17384	Soybean	nucleus	33.19	28.62
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.95	27.14
KRH24373	Soybean	nucleus	23.53	26.42
KRH29344	Soybean	nucleus	22.69	25.47
KRH27404	Soybean	extracellular, vacuole	39.5	25.13
KRH24393	Soybean	nucleus	21.43	24.88
KRH29378	Soybean	nucleus	29.83	24.65
KRH05902	Soybean	nucleus	32.35	23.55
KRH60788	Soybean	nucleus	28.99	21.63

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EMBL:ACUP02007179	EnsemblPlantsGene:GLYMA_12G051700	GO:GO:0000989	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	GO:GO:0046872	UniProt:I1LQD6
InterPro:IPR000315	EnsemblPlants:KRH24617	ProteinID:KRH24617	ProteinID:KRH24617.1	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF8	SMART:SM00336	UniParc:UPI00023D1524	InterPro:Znf_B-box	:

Description

hypothetical protein

Coordinates

chr12:+:3704987..3708481

Molecular Weight (calculated)

26085.0 Da

IEP (calculated)

4.909

GRAVY (calculated)

-0.273

Length

238 amino acids

Sequence
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQSL SNKLPRCDIC QDKPAFIFCV EDRALFCKDC DEPIHLASSL SANHQRFLAT
101: GIRVALGSNC TKGNEKGHVE PSKPKAQEVP AKIPSQQVPS FTSSWAVDDL LELTDFESPD KVQKQSLEFG ELEWLADVGL FGEQFPHEAL AAAEVPQLPM
201: TSSVGSHKAP KSLLSYKKPR IEVLDEDDDE HFTVPDLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.