Factsheet for GSMUA_Achr9P02360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr3P20130_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	GSMUA_Achr11P...	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr2P18060_001	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr4P19000_001	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr5P14120_001	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr8P14660_001	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr3P20130_001	AT2G32950.1	11226162
AT1G06040.1	GSMUA_AchrUn_...	AT2G32950.1	11226162
AT2G31380.1	GSMUA_Achr3P20130_001	AT2G32950.1	11226162
AT2G31380.1	GSMUA_AchrUn_...	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	81.09	75.98
VIT_05s0102g00750.t01	Wine grape	nucleus	62.6	62.34
KRH24617	Soybean	nucleus	61.34	61.34
KRH23214	Soybean	nucleus	60.92	60.67
KRH29616	Soybean	nucleus	60.5	60.5
PGSC0003DMT400069498	Potato	nucleus	57.98	59.23
CDX86539	Canola	nucleus	59.24	58.51
Solyc06g073180.2.1	Tomato	nucleus	57.14	58.37
Bra030635.1-P	Field mustard	nucleus	58.82	58.09
CDY15558	Canola	nucleus	58.4	57.92
Bra032441.1-P	Field mustard	nucleus	56.3	57.27
CDY06194	Canola	nucleus	56.3	57.27
Bra015469.1-P	Field mustard	nucleus	57.56	56.38
Bra021734.1-P	Field mustard	nucleus	56.72	56.25
CDY09992	Canola	nucleus	55.46	56.17
CDY19093	Canola	nucleus	56.3	56.07
CDY15382	Canola	nucleus	56.3	55.37
Zm00001d051018_P002	Maize	extracellular	58.82	55.34
AT1G06040.1	Thale cress	nucleus	57.56	55.24
TraesCS6A01G216400.1	Wheat	extracellular	59.24	55.08
EES07119	Sorghum	nucleus	60.08	54.37
TraesCS6D01G199200.1	Wheat	extracellular	59.24	54.23
TraesCS2A01G348900.1	Wheat	nucleus	57.56	53.94
CDY56613	Canola	nucleus	55.04	53.91
Bra018249.1-P	Field mustard	nucleus	55.04	53.91
AT2G31380.1	Thale cress	nucleus	53.78	53.78
CDY10800	Canola	nucleus	54.62	53.5
TraesCS6B01G246500.1	Wheat	extracellular	58.4	53.46
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	60.5	53.14
EES12431	Sorghum	nucleus	59.66	52.99
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	57.14	52.71
TraesCS2B01G367300.2	Wheat	nucleus	56.72	52.33
TraesCS2A01G366100.2	Wheat	nucleus	56.3	50.95
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	27.73	47.14
Os04t0493000-01	Rice	cytosol	36.13	46.74
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	30.67	40.33
GSMUA_Achr11P...	Banana	nucleus	32.77	39.39
GSMUA_Achr9P20930_001	Banana	cytosol	28.57	36.56
KRH10122	Soybean	nucleus	60.08	36.48
GSMUA_Achr3P16700_001	Banana	nucleus	29.83	36.41
GSMUA_Achr11P...	Banana	nucleus	28.15	36.22
GSMUA_Achr11P...	Banana	cytosol	29.41	35.35
GSMUA_Achr4P05180_001	Banana	cytosol	28.57	33.5
GSMUA_Achr10P...	Banana	cytosol	25.63	29.33
GSMUA_Achr6P21590_001	Banana	nucleus	36.55	29.0
GSMUA_Achr11P...	Banana	nucleus	31.51	28.63
GSMUA_AchrUn_...	Banana	nucleus	33.19	28.42
GSMUA_Achr6P14750_001	Banana	nucleus	35.71	28.15
GSMUA_Achr1P07770_001	Banana	cytosol	24.79	24.38
GSMUA_Achr1P07740_001	Banana	nucleus	33.61	20.41
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	30.67	19.06
GSMUA_Achr6P17960_001	Banana	cytosol	16.81	18.69

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr9G02360_001	EnsemblPlants:GSMUA_Achr9P02360_001	EnsemblPlants:GSMUA_Achr9T02360_001	InterPro:IPR000315
UniProt:M0TWU3	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF8	SMART:SM00336
UniParc:UPI0002950E1B	InterPro:Znf_B-box	:	:	:	:

Description

Salt tolerance protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G02360_001]

Coordinates

chr9:-:1714650..1716415

Molecular Weight (calculated)

26080.8 Da

IEP (calculated)

5.157

GRAVY (calculated)

-0.341

Length

238 amino acids

Sequence
(BLAST)

001: MKIQCDVCEK APAAVICCAD EAALCPSCDV EVHAANKLAS KHQRLRLECL PNGLPRCDIC QEKAAFIFCV EDRALFCRDC DEPVHVAGTL SGNHQRYLAT
101: GIRVAVSKMC NKDLKDNTEP PRHGPALIAT KVPATQQSTP SFMHSAWAVD EFLQLSDQEI GEKESPVGFG ELEWFADIGL FHDETPKGAQ AAAQVPELPT
201: SQASNTGFHR ANKHGTTFKK PRLEISDDEE YFTVPDIG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.