Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 16.89 | 70.83 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 64.9 | 65.33 |
| GSMUA_Achr8P16260_001 | Banana | endoplasmic reticulum | 26.16 | 56.43 |
| VIT_19s0014g00350.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 48.34 | 49.83 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 29.14 | 48.62 |
| Bra035051.1-P | Field mustard | nucleus | 46.03 | 47.6 |
| CDX87448 | Canola | nucleus | 46.03 | 47.6 |
| CDX79268 | Canola | nucleus | 45.36 | 47.57 |
| CDY69214 | Canola | nucleus | 45.36 | 47.57 |
| CDX88458 | Canola | nucleus | 46.36 | 47.46 |
| KRH21881 | Soybean | nucleus | 46.03 | 47.44 |
| Bra003640.1-P | Field mustard | nucleus | 45.03 | 47.22 |
| CDY11657 | Canola | nucleus | 46.03 | 47.12 |
| Bra008371.1-P | Field mustard | nucleus | 45.36 | 47.08 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 52.65 | 47.04 |
| Solyc07g062160.2.1 | Tomato | nucleus | 46.36 | 46.98 |
| CDY14607 | Canola | nucleus | 45.03 | 46.74 |
| KRH37922 | Soybean | nucleus | 45.03 | 46.58 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 55.3 | 46.52 |
| PGSC0003DMT400018196 | Potato | nucleus | 45.7 | 46.31 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 55.63 | 46.28 |
| GSMUA_Achr11P... | Banana | nucleus | 30.13 | 45.96 |
| Os06t0152200-01 | Rice | nucleus | 54.64 | 45.83 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 42.72 | 45.74 |
| CDY26870 | Canola | nucleus | 45.36 | 45.67 |
| PGSC0003DMT400048964 | Potato | nucleus | 44.37 | 44.82 |
| AT1G78600.2 | Thale cress | nucleus | 46.03 | 43.57 |
| KXG19323 | Sorghum | nucleus | 53.64 | 43.2 |
| GSMUA_Achr3P16700_001 | Banana | nucleus | 27.15 | 42.05 |
| Zm00001d036214_P001 | Maize | nucleus | 52.32 | 40.93 |
| HORVU7Hr1G023100.2 | Barley | plastid | 53.64 | 40.3 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 23.84 | 38.71 |
| Zm00001d045323_P004 | Maize | nucleus | 53.31 | 38.15 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 25.17 | 37.44 |
| KRH27404 | Soybean | extracellular, vacuole | 45.7 | 36.9 |
| GSMUA_Achr11P... | Banana | nucleus | 22.19 | 36.22 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 28.15 | 35.71 |
| GSMUA_Achr11P... | Banana | cytosol | 22.52 | 34.34 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 27.15 | 32.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.47 | 32.01 |
| GSMUA_Achr11P... | Banana | nucleus | 26.16 | 30.15 |
| GSMUA_Achr10P... | Banana | cytosol | 19.87 | 28.85 |
| GSMUA_Achr1P07770_001 | Banana | cytosol | 19.54 | 24.38 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 29.14 | 22.45 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 25.83 | 20.37 |
| GSMUA_Achr6P17960_001 | Banana | cytosol | 11.92 | 16.82 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P14750_001 | EnsemblPlants:GSMUA_Achr6T14750_001 | EnsemblPlantsGene:GSMUA_Achr6G14750_001 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF31 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 |
| UniParc:UPI0002951F2E | UniProt:M0T723 | MapMan:15.5.1.1 | : | : | : |
Description
Putative Probable salt tolerance-like protein At1g78600 [Source:GMGC_GENE;Acc:GSMUA_Achr6G14750_001]
Coordinates
chr6:-:9773303..9775367
Molecular Weight (calculated)
32360.5 Da
IEP (calculated)
6.332
GRAVY (calculated)
-0.341
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCNACEA AEAAVLCCAD EAALCWACDE RVHAANKVAG KHQRVSLFSD GAVGSGSSTR GVPKCDICQE ASGFFFCLED RALLCRSCDL AIHTANPYVS
101: AHQRFLVTGV RVGLDPTEPV APAASQQSHS AGRVVVSLSE HLPTGTHLVS STETNAVSSS QIANQNGGLL VSKAPLYGFS MSETILDWPL DDFFGFPDFN
201: QNFGFTEHSA SKADSGRHGS SQGSPTCRST DDDRNADECL GQVPEFRTVP KIPPPPTASG LSWQRNRHYP ASNNTVFVPD ICSSYDPNSF DASAGSKRRR
301: RQ
101: AHQRFLVTGV RVGLDPTEPV APAASQQSHS AGRVVVSLSE HLPTGTHLVS STETNAVSSS QIANQNGGLL VSKAPLYGFS MSETILDWPL DDFFGFPDFN
201: QNFGFTEHSA SKADSGRHGS SQGSPTCRST DDDRNADECL GQVPEFRTVP KIPPPPTASG LSWQRNRHYP ASNNTVFVPD ICSSYDPNSF DASAGSKRRR
301: RQ
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.