Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 85.95 | 91.13 |
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 17.06 | 70.83 |
| PGSC0003DMT400018196 | Potato | nucleus | 67.22 | 67.45 |
| VIT_19s0014g00350.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 59.2 | 60.41 |
| KRH21881 | Soybean | nucleus | 55.52 | 56.66 |
| Bra035051.1-P | Field mustard | nucleus | 50.17 | 51.37 |
| CDX87448 | Canola | nucleus | 50.17 | 51.37 |
| CDX79268 | Canola | nucleus | 48.49 | 50.35 |
| Bra008371.1-P | Field mustard | nucleus | 48.83 | 50.17 |
| CDX88458 | Canola | nucleus | 49.5 | 50.17 |
| CDY11657 | Canola | nucleus | 49.5 | 50.17 |
| CDY14607 | Canola | nucleus | 48.49 | 49.83 |
| Bra003640.1-P | Field mustard | nucleus | 47.83 | 49.65 |
| CDY69214 | Canola | nucleus | 47.49 | 49.31 |
| CDY26870 | Canola | nucleus | 48.83 | 48.67 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 48.16 | 48.0 |
| AT1G78600.2 | Thale cress | nucleus | 49.83 | 46.71 |
| KRH27404 | Soybean | extracellular, vacuole | 55.85 | 44.65 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 44.82 | 44.37 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 43.14 | 38.17 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 43.81 | 36.49 |
| Os06t0152200-01 | Rice | nucleus | 43.48 | 36.11 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 43.81 | 36.09 |
| PGSC0003DMT400069498 | Potato | nucleus | 27.76 | 35.62 |
| KXG19323 | Sorghum | nucleus | 43.48 | 34.67 |
| Zm00001d036214_P001 | Maize | nucleus | 42.14 | 32.64 |
| PGSC0003DMT400009328 | Potato | cytosol | 19.73 | 32.42 |
| HORVU7Hr1G023100.2 | Barley | plastid | 41.81 | 31.09 |
| Zm00001d045323_P004 | Maize | nucleus | 43.81 | 31.04 |
| PGSC0003DMT400009514 | Potato | nucleus | 28.76 | 28.86 |
| PGSC0003DMT400008044 | Potato | cytosol | 19.73 | 27.83 |
| PGSC0003DMT400079507 | Potato | nucleus | 23.08 | 27.38 |
| PGSC0003DMT400075652 | Potato | nucleus | 29.77 | 26.97 |
Protein Annotations
| EntrezGene:102593998 | MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | EMBL:KX576527 | UniProt:M1BN32 |
| PFAM:PF00643 | EnsemblPlantsGene:PGSC0003DMG400019025 | PGSC:PGSC0003DMG400019025 | EnsemblPlants:PGSC0003DMT400048964 | PFscan:PS50119 | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF31 | SMART:SM00336 | UniParc:UPI000295D9AC | RefSeq:XP_006367654.1 | InterPro:Znf_B-box | SEG:seg |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019025]
Coordinates
chr12:-:7848214..7852389
Molecular Weight (calculated)
32031.6 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.284
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCNVCEV AEAKVLCCAD EAALCWYCDD KVHAANKLAN KHQRVPLSAS SSPMPKCDIC QETVGFFFCL EDRALLCRKC DISIHTVNAY VSSHQRFLLT
101: GVKVGLEPLG PSASASSGKS PSIQKVAEQE SPPIPKSVAP LSSATPSEGV LPVHTSGNGN FAPSRLPMVG GSAAGIIPQW QFDQYLGMGD FNQNYGYMDY
201: GQSKADNGKL GESASSPFLR DADAEVAGDE CFSTEVADTC WAVPQIPSPP TASGLNWPTK TIQNPFDAAL LESDASYFPL QNIQDQQSNG SGSKRSRHF
101: GVKVGLEPLG PSASASSGKS PSIQKVAEQE SPPIPKSVAP LSSATPSEGV LPVHTSGNGN FAPSRLPMVG GSAAGIIPQW QFDQYLGMGD FNQNYGYMDY
201: GQSKADNGKL GESASSPFLR DADAEVAGDE CFSTEVADTC WAVPQIPSPP TASGLNWPTK TIQNPFDAAL LESDASYFPL QNIQDQQSNG SGSKRSRHF
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.