Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g084420.2.1 | Tomato | cytosol | 47.25 | 97.73 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 71.43 | 67.36 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 70.88 | 61.43 |
| AT2G21320.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 56.59 | 59.88 |
| Bra010718.1-P | Field mustard | cytosol | 57.14 | 57.78 |
| CDX90301 | Canola | cytosol | 57.14 | 57.78 |
| Zm00001d021278_P001 | Maize | cytosol | 65.38 | 57.77 |
| Bra033588.1-P | Field mustard | cytosol | 57.69 | 57.69 |
| CDX72726 | Canola | cytosol | 56.59 | 57.54 |
| CDY12111 | Canola | cytosol | 56.59 | 57.22 |
| EER97079 | Sorghum | cytosol | 65.93 | 56.87 |
| CDX82018 | Canola | cytosol | 58.24 | 56.68 |
| Os09t0527900-01 | Rice | cytosol | 65.38 | 56.4 |
| Bra031180.1-P | Field mustard | cytosol | 57.69 | 55.85 |
| TraesCS5D01G323400.1 | Wheat | cytosol | 64.29 | 55.45 |
| PGSC0003DMT400008044 | Potato | cytosol | 64.29 | 55.19 |
| TraesCS5B01G317700.1 | Wheat | cytosol | 63.74 | 54.98 |
| TraesCS5A01G317100.1 | Wheat | cytosol | 63.74 | 54.98 |
| CDY22402 | Canola | plastid | 43.96 | 49.69 |
| AT4G38960.3 | Thale cress | cytosol | 56.59 | 45.58 |
| HORVU5Hr1G081190.1 | Barley | cytosol, nucleus, plastid | 64.29 | 42.55 |
| Zm00001d006198_P001 | Maize | cytosol | 54.4 | 38.98 |
| GSMUA_Achr6P17960_001 | Banana | cytosol | 37.91 | 32.24 |
| PGSC0003DMT400069498 | Potato | nucleus | 26.92 | 21.03 |
| PGSC0003DMT400018196 | Potato | nucleus | 32.97 | 20.13 |
| PGSC0003DMT400048964 | Potato | nucleus | 32.42 | 19.73 |
| PGSC0003DMT400079507 | Potato | nucleus | 26.37 | 19.05 |
| PGSC0003DMT400009514 | Potato | nucleus | 29.12 | 17.79 |
| PGSC0003DMT400075652 | Potato | nucleus | 30.77 | 16.97 |
Protein Annotations
| EMBL:KX576533 | EnsemblPlants:PGSC0003DMT400009328 | EnsemblPlantsGene:PGSC0003DMG400003625 | EntrezGene:102606359 | Gene3D:3.30.40.200 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 |
| InterPro:Znf_B-box | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF17 | PFAM:PF00643 | PFscan:PS50119 | PGSC:PGSC0003DMG400003625 |
| RefSeq:XP_006340704.1 | SMART:SM00336 | UniParc:UPI0002963B5A | UniProt:M0ZW20 | MapMan:15.5.1.1 | : |
Description
COL domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003625]
Coordinates
chr2:+:39712058..39715702
Molecular Weight (calculated)
20106.0 Da
IEP (calculated)
7.678
GRAVY (calculated)
-0.612
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAKP NEVPRCDICE SSPAFFYCEV DGSSLCLQCD MMVHVGGKRT HSRYLLLRQK
101: VEFPGDKSGP TEELARKTLD PGENKRDHSH SPKPMVKDNQ QNHRGSPILI SDGSADGNGK KDKMIDLNVK PNRFHGHASN QD
101: VEFPGDKSGP TEELARKTLD PGENKRDHSH SPKPMVKDNQ QNHRGSPILI SDGSADGNGK KDKMIDLNVK PNRFHGHASN QD
001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK
Arabidopsis Description
B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.