Factsheet for TraesCS5B01G317700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G317100.1	Wheat	cytosol	99.53	99.53
TraesCS5D01G323400.1	Wheat	cytosol	98.1	98.1
Solyc02g084420.2.1	Tomato	cytosol	34.6	82.95
Zm00001d021278_P001	Maize	cytosol	78.67	80.58
Os09t0527900-01	Rice	cytosol	80.57	80.57
EER97079	Sorghum	cytosol	79.15	79.15
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	97.63	74.91
GSMUA_Achr10P...	Banana	cytosol	65.4	66.35
VIT_04s0023g03030.t01	Wine grape	cytosol	57.82	66.3
PGSC0003DMT400009328	Potato	cytosol	54.98	63.74
CDX82018	Canola	cytosol	54.03	60.96
VIT_03s0038g00690.t01	Wine grape	cytosol	60.66	60.95
AT2G21320.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	49.29	60.47
Bra031180.1-P	Field mustard	cytosol	53.55	60.11
Bra010718.1-P	Field mustard	cytosol	50.71	59.44
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	54.03	59.07
CDY12111	Canola	cytosol	49.76	58.33
CDX90301	Canola	cytosol	49.76	58.33
CDX72726	Canola	cytosol	49.29	58.1
KRH29344	Soybean	nucleus	56.87	56.6
KRH24373	Soybean	nucleus	56.87	56.6
Bra033588.1-P	Field mustard	cytosol	48.82	56.59
PGSC0003DMT400008044	Potato	cytosol	56.4	56.13
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	54.03	54.29
GSMUA_Achr1P07770_001	Banana	cytosol	61.14	53.31
Zm00001d006198_P001	Maize	cytosol	63.03	52.36
CDY22402	Canola	plastid	38.86	50.93
Solyc01g110370.2.1	Tomato	cytosol	55.45	48.55
AT4G38960.3	Thale cress	cytosol	50.71	47.35
TraesCS6B01G172300.1	Wheat	nucleus	25.12	24.77
TraesCS6B01G285200.1	Wheat	nucleus	25.59	22.69
TraesCS2B01G367300.2	Wheat	nucleus	27.49	22.48
TraesCS6B01G246500.1	Wheat	extracellular	27.49	22.31
TraesCS2B01G406600.2	Wheat	nucleus	26.54	21.13
TraesCS3B01G156900.1	Wheat	nucleus	27.96	16.91
TraesCS7B01G286300.1	Wheat	nucleus	24.17	16.4
TraesCS7B01G006400.1	Wheat	nucleus	26.07	16.27

Protein Annotations

EnsemblPlants:TraesCS5B01G317700.1	EnsemblPlantsGene:TraesCS5B01G317700	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31832
PANTHER:PTHR31832:SF5	PFAM:PF00643	PFscan:PS50119	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.1

Description

No Description!

Coordinates

chr5B:+:501954301..501958485

Molecular Weight (calculated)

23089.9 Da

IEP (calculated)

6.302

GRAVY (calculated)

-0.609

Length

211 amino acids

Sequence
(BLAST)

001: MRTICDVCES AVAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLVRCDICE SSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR
101: VEFPGDKPGH MDDVAMQQME SENPRDQNNA HSVAKEQMVN HHHNAYDPAS DGNCNGQGAI DSKMFDLNMR PARNNGQGSS SQTHGVDHSH NNNHDSSGVV
201: PTCNYDGATD K

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.