Factsheet for Bra033588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22402	Canola	plastid	84.07	95.03
Bra010718.1-P	Field mustard	cytosol	90.66	91.67
Solyc02g084420.2.1	Tomato	cytosol	41.21	85.23
Bra031180.1-P	Field mustard	cytosol	76.92	74.47
AT4G38960.3	Thale cress	cytosol	89.56	72.12
VIT_04s0023g03030.t01	Wine grape	cytosol	59.34	58.7
VIT_03s0038g00690.t01	Wine grape	cytosol	67.58	58.57
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	62.09	58.55
PGSC0003DMT400008044	Potato	cytosol	68.13	58.49
PGSC0003DMT400009328	Potato	cytosol	57.69	57.69
KRH29344	Soybean	nucleus	62.64	53.77
KRH24373	Soybean	nucleus	62.64	53.77
GSMUA_Achr10P...	Banana	cytosol	60.44	52.88
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	60.99	52.86
Os09t0527900-01	Rice	cytosol	60.44	52.13
Zm00001d021278_P001	Maize	cytosol	58.79	51.94
EER97079	Sorghum	cytosol	59.34	51.18
Solyc01g110370.2.1	Tomato	cytosol	67.58	51.04
TraesCS5D01G323400.1	Wheat	cytosol	56.59	48.82
TraesCS5B01G317700.1	Wheat	cytosol	56.59	48.82
TraesCS5A01G317100.1	Wheat	cytosol	56.59	48.82
GSMUA_Achr1P07770_001	Banana	cytosol	60.44	45.45
HORVU5Hr1G081190.1	Barley	cytosol, nucleus, plastid	56.04	37.09
Zm00001d006198_P001	Maize	cytosol	48.9	35.04
Bra018249.1-P	Field mustard	nucleus	30.22	22.63
Bra015469.1-P	Field mustard	nucleus	30.22	22.63
Bra021734.1-P	Field mustard	nucleus	29.67	22.5
Bra032441.1-P	Field mustard	nucleus	28.57	22.22
Bra030635.1-P	Field mustard	nucleus	28.57	21.58
Bra003640.1-P	Field mustard	nucleus	33.52	21.18
Bra010713.1-P	Field mustard	nucleus	28.02	21.16
Bra011879.1-P	Field mustard	nucleus	27.47	20.92
Bra008371.1-P	Field mustard	nucleus	32.42	20.27
Bra035051.1-P	Field mustard	nucleus	32.42	20.21
Bra008204.1-P	Field mustard	nucleus	28.57	17.22
Bra015835.1-P	Field mustard	nucleus	29.67	16.82
Bra003748.1-P	Field mustard	nucleus	29.12	16.61

Protein Annotations

EnsemblPlants:Bra033588.1	EnsemblPlants:Bra033588.1-P	EnsemblPlantsGene:Bra033588	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PANTHER:PTHR31832:SF5	PFAM:PF00643	PFscan:PS50119	SMART:SM00336	UniParc:UPI000253F8F1
UniProt:M4EXQ1	MapMan:15.5.1.1	:	:	:	:

Description

AT4G38960 (E=7e-093) | zinc finger (B-box type) family protein

Coordinates

chrA06:-:26095125..26097370

Molecular Weight (calculated)

19974.5 Da

IEP (calculated)

6.377

GRAVY (calculated)

-0.552

Length

182 amino acids

Sequence
(BLAST)

001: MRILCDACEN AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKP PNNTRANLQN QRVSSNANGE ANGKTTDDEM IDLNSNPQRL HEPSSNNHGI DVNNTSNHET PGVVPFKREP DK

Best Arabidopsis Sequence Match ( AT4G38960.1 )
(BLAST)

001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK

Arabidopsis Description

B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.