Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 3
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033588.1-P | Field mustard | cytosol | 95.03 | 84.07 |
| CDX72726 | Canola | cytosol | 88.2 | 79.33 |
| CDX90301 | Canola | cytosol | 84.47 | 75.56 |
| CDY12111 | Canola | cytosol | 83.85 | 75.0 |
| CDX82018 | Canola | cytosol | 70.81 | 60.96 |
| AT4G38960.3 | Thale cress | cytosol | 84.47 | 60.18 |
| Solyc02g084420.2.1 | Tomato | cytosol | 31.06 | 56.82 |
| PGSC0003DMT400008044 | Potato | cytosol | 62.11 | 47.17 |
| VIT_03s0038g00690.t01 | Wine grape | cytosol | 60.25 | 46.19 |
| VIT_04s0023g03030.t01 | Wine grape | cytosol | 52.17 | 45.65 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.42 | 44.56 |
| PGSC0003DMT400009328 | Potato | cytosol | 49.69 | 43.96 |
| KRH29344 | Soybean | nucleus | 56.52 | 42.92 |
| GSMUA_Achr10P... | Banana | cytosol | 55.28 | 42.79 |
| Os09t0527900-01 | Rice | cytosol | 55.9 | 42.65 |
| KRH24373 | Soybean | nucleus | 55.9 | 42.45 |
| Zm00001d021278_P001 | Maize | cytosol | 53.42 | 41.75 |
| EER97079 | Sorghum | cytosol | 54.04 | 41.23 |
| Solyc01g110370.2.1 | Tomato | cytosol | 61.49 | 41.08 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 52.17 | 40.0 |
| TraesCS5A01G317100.1 | Wheat | cytosol | 50.93 | 38.86 |
| TraesCS5D01G323400.1 | Wheat | cytosol | 50.93 | 38.86 |
| TraesCS5B01G317700.1 | Wheat | cytosol | 50.93 | 38.86 |
| GSMUA_Achr1P07770_001 | Banana | cytosol | 54.66 | 36.36 |
| Zm00001d006198_P001 | Maize | cytosol | 51.55 | 32.68 |
| HORVU5Hr1G081190.1 | Barley | cytosol, nucleus, plastid | 50.31 | 29.45 |
| CDX86867 | Canola | nucleus | 21.74 | 22.01 |
| CDX99534 | Canola | nucleus | 21.74 | 22.01 |
| CDY10800 | Canola | nucleus | 24.84 | 16.46 |
| CDY41957 | Canola | nucleus | 21.12 | 16.04 |
| CDY19093 | Canola | nucleus | 23.6 | 15.9 |
| CDY15382 | Canola | nucleus | 23.6 | 15.7 |
| CDY56613 | Canola | nucleus | 23.6 | 15.64 |
| CDY42602 | Canola | nucleus | 22.36 | 15.38 |
| CDY06194 | Canola | nucleus | 21.74 | 14.96 |
| CDX86539 | Canola | nucleus | 22.36 | 14.94 |
| CDY69214 | Canola | nucleus | 26.71 | 14.93 |
| CDX79268 | Canola | nucleus | 26.71 | 14.93 |
| CDY15558 | Canola | nucleus | 21.74 | 14.58 |
| CDX90306 | Canola | nucleus | 21.74 | 14.52 |
| CDY09992 | Canola | nucleus | 21.12 | 14.47 |
| CDY12117 | Canola | nucleus | 21.74 | 14.46 |
| CDY11657 | Canola | nucleus | 26.09 | 14.24 |
| CDX88458 | Canola | nucleus | 26.09 | 14.24 |
| CDX87448 | Canola | nucleus | 25.47 | 14.04 |
| CDY14607 | Canola | nucleus | 24.84 | 13.75 |
| CDY26870 | Canola | nucleus | 24.84 | 13.33 |
| CDY39040 | Canola | nucleus | 22.36 | 12.24 |
| CDX85903 | Canola | nucleus | 24.22 | 12.23 |
| CDX68124 | Canola | nucleus | 24.22 | 12.23 |
| CDY13564 | Canola | nucleus | 22.98 | 12.21 |
| CDY47514 | Canola | nucleus | 24.22 | 12.15 |
| CDX73178 | Canola | nucleus | 24.22 | 12.11 |
Protein Annotations
| EnsemblPlants:CDY22402 | EnsemblPlantsGene:GSBRNA2T00018892001 | GO:A0A078GBE7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF5 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDY22402 | ProteinID:CDY22402.1 | SMART:SM00336 |
| UniParc:UPI0004EE58A3 | UniProt:A0A078GBE7 | MapMan:15.5.1.1 | : | : | : |
Description
BnaA06g37240DBnaA06g37240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBE7]
Coordinates
chrLK032130:-:567701..568805
Molecular Weight (calculated)
17837.1 Da
IEP (calculated)
7.124
GRAVY (calculated)
-0.663
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFQTLLCLQ VHMCNKLASR HVRVGLAEPS NAPCCDICEN APAFFYCEID GSSLCLQCDM VVHVGGKRTH GRFLLLRQRI EFPGDKPKPP NNTRANLQNQ
101: RVSSNANGEA NGKTTDDEMI DLNSNPQRLH EPSSNNHGID VNNTSNHETP GVVPFKREPD K
101: RVSSNANGEA NGKTTDDEMI DLNSNPQRLH EPSSNNHGID VNNTSNHETP GVVPFKREPD K
001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KALHMRLDIS KCSESVKRVQ IVETSSLIWW IKMGTFCLQS LHLVVHMCNK LASRHVRVGL AEPSNAPCCD
101: ICENAPAFFY CEIDGSSLCL QCDMVVHVGG KRTHGRFLLL RQRIEFPGDK PKENNTRDNL QNQRVSTNGN GEANGKIDDE MIDLNANPQR VHEPSSNNNG
201: IDVNNENNHE PAGLVPVGPF KRESEK
101: ICENAPAFFY CEIDGSSLCL QCDMVVHVGG KRTHGRFLLL RQRIEFPGDK PKENNTRDNL QNQRVSTNGN GEANGKIDDE MIDLNANPQR VHEPSSNNNG
201: IDVNNENNHE PAGLVPVGPF KRESEK
Arabidopsis Description
B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.