Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010713.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY12117 | Canola | nucleus | 95.85 | 95.45 |
| AT4G39070.1 | Thale cress | cytosol | 88.38 | 88.02 |
| CDY41957 | Canola | nucleus | 73.03 | 83.02 |
| CDY42602 | Canola | nucleus | 72.61 | 74.79 |
| Solyc01g110180.2.1 | Tomato | nucleus | 45.64 | 54.19 |
| Zm00001d017412_P001 | Maize | nucleus | 30.29 | 51.41 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 37.76 | 48.92 |
| GSMUA_Achr11P... | Banana | cytosol | 39.83 | 48.48 |
| GSMUA_Achr11P... | Banana | nucleus | 36.93 | 48.11 |
| KRH51476 | Soybean | nucleus | 46.06 | 47.64 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 39.0 | 46.31 |
| PGSC0003DMT400079507 | Potato | nucleus | 46.47 | 44.44 |
| CDX86867 | Canola | nucleus | 26.14 | 39.62 |
| CDX99534 | Canola | nucleus | 26.14 | 39.62 |
| Zm00001d002806_P001 | Maize | nucleus | 40.66 | 37.98 |
| Zm00001d025957_P001 | Maize | nucleus | 40.25 | 37.89 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 37.34 | 37.82 |
| OQU82040 | Sorghum | nucleus | 41.08 | 37.36 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 36.51 | 37.29 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 36.51 | 36.97 |
| Os04t0540200-01 | Rice | nucleus | 38.17 | 36.8 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 46.06 | 36.76 |
| CDY39040 | Canola | nucleus | 44.81 | 36.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.91 | 36.33 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 39.0 | 35.88 |
| KRH29378 | Soybean | nucleus | 42.74 | 35.76 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 38.17 | 35.66 |
| GSMUA_Achr11P... | Banana | nucleus | 38.59 | 35.5 |
| CDY13564 | Canola | nucleus | 44.4 | 35.31 |
| KRH60788 | Soybean | nucleus | 46.47 | 35.11 |
| CDX85903 | Canola | nucleus | 46.06 | 34.8 |
| CDX68124 | Canola | nucleus | 46.06 | 34.8 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 37.34 | 33.96 |
| CDY47514 | Canola | nucleus | 45.23 | 33.96 |
| Zm00001d051309_P001 | Maize | nucleus | 39.0 | 33.94 |
| Os02t0646200-01 | Rice | nucleus | 37.76 | 33.83 |
| CDX73178 | Canola | nucleus | 44.81 | 33.54 |
| EES07539 | Sorghum | nucleus | 39.42 | 32.2 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 36.51 | 32.0 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 36.93 | 31.23 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 36.51 | 30.88 |
| CDY06194 | Canola | nucleus | 29.88 | 30.77 |
| CDY09992 | Canola | nucleus | 29.88 | 30.64 |
| KRH24393 | Soybean | nucleus | 25.73 | 30.24 |
| CDX86539 | Canola | nucleus | 29.88 | 29.88 |
| CDY15558 | Canola | nucleus | 29.46 | 29.58 |
| Zm00001d036418_P001 | Maize | nucleus | 32.78 | 29.37 |
| CDX72726 | Canola | cytosol | 21.58 | 29.05 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 37.34 | 28.94 |
| CDX90301 | Canola | cytosol | 21.58 | 28.89 |
| CDY12111 | Canola | cytosol | 21.58 | 28.89 |
| EER90373 | Sorghum | cytosol | 36.51 | 28.85 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 37.34 | 28.75 |
| Os06t0713000-01 | Rice | nucleus | 36.51 | 28.57 |
| CDX82018 | Canola | cytosol | 21.58 | 27.81 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 41.08 | 25.85 |
| CDY19093 | Canola | nucleus | 24.9 | 25.1 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 36.93 | 25.07 |
| CDX79268 | Canola | nucleus | 29.88 | 25.0 |
| CDY56613 | Canola | nucleus | 24.9 | 24.69 |
| CDY10800 | Canola | nucleus | 24.9 | 24.69 |
| CDY69214 | Canola | nucleus | 29.46 | 24.65 |
| CDY15382 | Canola | nucleus | 24.48 | 24.38 |
| CDX87448 | Canola | nucleus | 29.46 | 24.32 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 39.42 | 24.23 |
| CDY11657 | Canola | nucleus | 29.46 | 24.07 |
| CDX88458 | Canola | nucleus | 29.46 | 24.07 |
| CDY14607 | Canola | nucleus | 28.63 | 23.71 |
| CDY26870 | Canola | nucleus | 28.63 | 23.0 |
| CDY22402 | Canola | plastid | 14.52 | 21.74 |
Protein Annotations
| EnsemblPlants:CDX90306 | EnsemblPlantsGene:GSBRNA2T00150887001 | Gene3D:3.30.40.200 | GO:A0A078DM14 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF18 | PFAM:PF00643 | PFscan:PS50119 | ProteinID:CDX90306 | ProteinID:CDX90306.1 |
| SEG:seg | SMART:SM00336 | UniParc:UPI0002546973 | MapMan:15.5.1.1 | : | : |
Description
BnaA08g16780D
Coordinates
chrLK031862:-:1170628..1172970
Molecular Weight (calculated)
26720.0 Da
IEP (calculated)
6.422
GRAVY (calculated)
-0.516
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIWCDVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHQRFSLTSP TFKDAPLCDI CGKRRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS TYPKASNSIS TTVLSRAKTR PKSVSGEVPS SASSEVFASS PSTTTSNYYY GLDENYHQVS DSGSGSGGTG SISEYLMETL PGWRVEDLLE
201: HPSCVSHEDN IISTNNNESY MVYDGSLQYH HQGFWEQKPF S
101: TGVKISASPS TYPKASNSIS TTVLSRAKTR PKSVSGEVPS SASSEVFASS PSTTTSNYYY GLDENYHQVS DSGSGSGGTG SISEYLMETL PGWRVEDLLE
201: HPSCVSHEDN IISTNNNESY MVYDGSLQYH HQGFWEQKPF S
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
Arabidopsis Description
BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.