Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12117 | Canola | nucleus | 89.26 | 89.26 |
| Bra010713.1-P | Field mustard | nucleus | 88.02 | 88.38 |
| CDX90306 | Canola | nucleus | 88.02 | 88.38 |
| Solyc01g110180.2.1 | Tomato | nucleus | 45.87 | 54.68 |
| Zm00001d017412_P001 | Maize | nucleus | 30.17 | 51.41 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 37.6 | 48.92 |
| GSMUA_Achr11P... | Banana | nucleus | 37.19 | 48.65 |
| GSMUA_Achr11P... | Banana | cytosol | 39.67 | 48.48 |
| KRH51476 | Soybean | nucleus | 45.87 | 47.64 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 39.67 | 47.29 |
| PGSC0003DMT400079507 | Potato | nucleus | 46.69 | 44.84 |
| AT4G10240.1 | Thale cress | nucleus | 26.03 | 38.89 |
| Zm00001d025957_P001 | Maize | nucleus | 40.08 | 37.89 |
| Zm00001d002806_P001 | Maize | nucleus | 40.08 | 37.6 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 36.78 | 37.4 |
| OQU82040 | Sorghum | nucleus | 40.91 | 37.36 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 35.95 | 36.86 |
| Os04t0540200-01 | Rice | nucleus | 38.02 | 36.8 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 45.87 | 36.76 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 35.95 | 36.55 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 38.84 | 35.88 |
| KRH29378 | Soybean | nucleus | 42.56 | 35.76 |
| KRH60788 | Soybean | nucleus | 47.11 | 35.74 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 38.02 | 35.66 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.91 | 35.61 |
| GSMUA_Achr11P... | Banana | nucleus | 38.43 | 35.5 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 37.19 | 33.96 |
| Os02t0646200-01 | Rice | nucleus | 37.6 | 33.83 |
| AT1G75540.1 | Thale cress | nucleus | 45.87 | 33.53 |
| Zm00001d051309_P001 | Maize | nucleus | 38.02 | 33.21 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 36.36 | 32.0 |
| EES07539 | Sorghum | nucleus | 38.43 | 31.53 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 36.78 | 31.23 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 36.36 | 30.88 |
| KRH24393 | Soybean | nucleus | 25.62 | 30.24 |
| Zm00001d036418_P001 | Maize | nucleus | 33.06 | 29.74 |
| AT2G21320.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.07 | 29.65 |
| EER90373 | Sorghum | cytosol | 36.78 | 29.18 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 37.19 | 28.94 |
| Os06t0713000-01 | Rice | nucleus | 36.78 | 28.9 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 37.19 | 28.75 |
| AT1G06040.1 | Thale cress | nucleus | 28.93 | 28.23 |
| AT2G31380.1 | Thale cress | nucleus | 25.21 | 25.63 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 40.5 | 25.59 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 36.78 | 25.07 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 38.43 | 23.72 |
| AT4G38960.3 | Thale cress | cytosol | 20.25 | 21.68 |
| AT1G78600.2 | Thale cress | nucleus | 27.69 | 21.0 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EntrezGene:830062 | ProteinID:AEE87014.1 | EMBL:AK118879 | ArrayExpress:AT4G39070 |
| EnsemblPlantsGene:AT4G39070 | RefSeq:AT4G39070 | TAIR:AT4G39070 | RefSeq:AT4G39070-TAIR-G | EnsemblPlants:AT4G39070.1 | TAIR:AT4G39070.1 |
| EMBL:BT028893 | ProteinID:CAB38827.1 | ProteinID:CAB80570.1 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009741 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010200 |
| GO:GO:0043565 | GO:GO:0046872 | GO:GO:0080167 | GO:GO:1900458 | GO:GO:2000306 | InterPro:IPR000315 |
| RefSeq:NP_195618.2 | PFAM:PF00643 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF18 | UniProt:Q0IGM7 | SMART:SM00336 | UniParc:UPI0000162BC2 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
BBX20B-box zinc finger protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q0IGM7]
Coordinates
chr4:-:18204631..18206684
Molecular Weight (calculated)
26780.9 Da
IEP (calculated)
6.493
GRAVY (calculated)
-0.499
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIWCAVCDK EEASVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI CGERRALLFC QEDRAILCRE CDIPIHQANE HTKKHNRFLL
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
101: TGVKISASPS AYPRASNSNS AAAFGRAKTR PKSVSSEVPS SASNEVFTSS SSTTTSNCYY GIEENYHHVS DSGSGSGCTG SISEYLMETL PGWRVEDLLE
201: HPSCVSYEDN IITNNNNSES YRVYDGSSQF HHQGFWDHKP FS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.