Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018207_P001 | |
| Zm00001d052138_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | Zm00001d018207_P001 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | Zm00001d052138_P004 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90373 | Sorghum | cytosol | 85.5 | 75.41 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 84.76 | 64.23 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 61.71 | 58.25 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 59.48 | 58.18 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 62.08 | 53.7 |
| Os06t0713000-01 | Rice | nucleus | 61.34 | 53.57 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 61.34 | 52.72 |
| Zm00001d017412_P001 | Maize | nucleus | 24.91 | 47.18 |
| GSMUA_Achr11P... | Banana | nucleus | 31.6 | 45.95 |
| GSMUA_Achr11P... | Banana | cytosol | 33.09 | 44.95 |
| Zm00001d025957_P001 | Maize | nucleus | 36.06 | 37.89 |
| CDY41957 | Canola | nucleus | 29.37 | 37.26 |
| Zm00001d002806_P001 | Maize | nucleus | 35.32 | 36.82 |
| Bra011879.1-P | Field mustard | nucleus | 31.23 | 35.15 |
| CDY42602 | Canola | nucleus | 30.11 | 34.62 |
| Solyc01g110180.2.1 | Tomato | nucleus | 26.02 | 34.48 |
| Zm00001d051309_P001 | Maize | nucleus | 35.32 | 34.3 |
| KRH51757 | Soybean | nucleus | 31.23 | 34.29 |
| KRH51476 | Soybean | nucleus | 29.37 | 33.91 |
| CDY12117 | Canola | nucleus | 30.48 | 33.88 |
| AT4G39070.1 | Thale cress | cytosol | 29.74 | 33.06 |
| KRH17384 | Soybean | nucleus | 33.83 | 32.97 |
| Bra010713.1-P | Field mustard | nucleus | 29.37 | 32.78 |
| CDX90306 | Canola | nucleus | 29.37 | 32.78 |
| KRH61078 | Soybean | nucleus | 32.34 | 32.71 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 35.32 | 31.35 |
| PGSC0003DMT400009514 | Potato | nucleus | 33.09 | 29.87 |
| Solyc04g081020.2.1 | Tomato | nucleus | 32.71 | 29.43 |
| Bra008204.1-P | Field mustard | nucleus | 32.34 | 28.81 |
| Solyc12g089240.1.1 | Tomato | nucleus | 34.94 | 28.57 |
| KRH29378 | Soybean | nucleus | 30.48 | 28.47 |
| CDY39040 | Canola | nucleus | 30.86 | 28.23 |
| PGSC0003DMT400079507 | Potato | nucleus | 26.39 | 28.17 |
| CDX73178 | Canola | nucleus | 33.46 | 27.95 |
| PGSC0003DMT400075652 | Potato | nucleus | 34.2 | 27.88 |
| CDY13564 | Canola | nucleus | 31.23 | 27.72 |
| CDX68124 | Canola | nucleus | 32.71 | 27.59 |
| CDY47514 | Canola | nucleus | 32.71 | 27.41 |
| Bra015835.1-P | Field mustard | nucleus | 32.71 | 27.41 |
| CDX85903 | Canola | nucleus | 32.34 | 27.27 |
| Bra003748.1-P | Field mustard | nucleus | 32.34 | 27.27 |
| KRH05902 | Soybean | nucleus | 33.09 | 27.22 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 30.11 | 26.82 |
| Zm00001d051018_P002 | Maize | extracellular | 24.54 | 26.09 |
| AT1G75540.1 | Thale cress | nucleus | 31.97 | 25.98 |
| KRH24393 | Soybean | nucleus | 19.33 | 25.37 |
| KRH60788 | Soybean | nucleus | 28.62 | 24.14 |
| Zm00001d021278_P001 | Maize | cytosol | 16.36 | 21.36 |
| Zm00001d039437_P001 | Maize | nucleus | 27.14 | 20.33 |
| Zm00001d037735_P001 | Maize | cytosol | 23.79 | 19.88 |
| Zm00001d036214_P001 | Maize | nucleus | 26.02 | 18.13 |
| Zm00001d045323_P004 | Maize | nucleus | 26.77 | 17.06 |
| Zm00001d006198_P001 | Maize | cytosol | 12.64 | 13.39 |
| Zm00001d010093_P001 | Maize | nucleus | 5.2 | 7.04 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | ProteinID:AQK80954.1 | UniProt:B4FMW2 | EMBL:BT038450 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | GO:GO:0046872 |
| EMBL:HQ858776 | InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF11 |
| SMART:SM00336 | UniParc:UPI00017B6CD8 | EnsemblPlantsGene:Zm00001d036418 | EnsemblPlants:Zm00001d036418_P001 | EnsemblPlants:Zm00001d036418_T001 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
double B-box zinc finger protein9B-box zinc finger protein 20
Coordinates
chr6:+:87645024..87646346
Molecular Weight (calculated)
28108.9 Da
IEP (calculated)
4.365
GRAVY (calculated)
-0.103
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVLCDVCGG APAAVLFCTD EAALCSACDR RVHRADKRRR IPLVQPCGDD SAAAAAAPLC DVCKERRGLV FCVEDRAILC PDCDDPIHSA NDLTAKHTRF
101: LLVGAKLSAA LVDQAPPSPD DDDDDVAEPD AVPAACAAKA SSLESGGGSS ISDYLTNICP GWRVDDLLLD DSSFSAPSKT GYSDGHDQVP SVDADLFDVV
201: ASGRPGKRVG GAALGFDKAP ASVVVVPTQG CVTERTWNSD SDVFAVPELP QPPPAKKARP APAPTFWCF
101: LLVGAKLSAA LVDQAPPSPD DDDDDVAEPD AVPAACAAKA SSLESGGGSS ISDYLTNICP GWRVDDLLLD DSSFSAPSKT GYSDGHDQVP SVDADLFDVV
201: ASGRPGKRVG GAALGFDKAP ASVVVVPTQG CVTERTWNSD SDVFAVPELP QPPPAKKARP APAPTFWCF
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.