Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400036075 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | PGSC0003DMT400036075 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g089240.1.1 | Tomato | nucleus | 93.33 | 93.62 |
| PGSC0003DMT400009514 | Potato | nucleus | 56.36 | 62.42 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 52.12 | 56.77 |
| KRH17384 | Soybean | nucleus | 46.97 | 56.16 |
| KRH51757 | Soybean | nucleus | 40.0 | 53.88 |
| GSMUA_Achr11P... | Banana | nucleus | 28.79 | 51.35 |
| KRH61078 | Soybean | nucleus | 40.91 | 50.75 |
| Bra008204.1-P | Field mustard | nucleus | 45.15 | 49.34 |
| Zm00001d017412_P001 | Maize | nucleus | 20.91 | 48.59 |
| GSMUA_Achr11P... | Banana | cytosol | 29.09 | 48.48 |
| KRH05902 | Soybean | nucleus | 47.58 | 48.01 |
| CDY39040 | Canola | nucleus | 42.42 | 47.62 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 26.67 | 47.31 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 29.09 | 47.29 |
| CDY13564 | Canola | nucleus | 43.33 | 47.19 |
| CDY47514 | Canola | nucleus | 45.15 | 46.42 |
| Bra015835.1-P | Field mustard | nucleus | 45.15 | 46.42 |
| CDX85903 | Canola | nucleus | 44.85 | 46.4 |
| CDX68124 | Canola | nucleus | 44.55 | 46.08 |
| Bra003748.1-P | Field mustard | nucleus | 44.55 | 46.08 |
| CDX73178 | Canola | nucleus | 44.85 | 45.96 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 31.82 | 44.49 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 31.82 | 44.12 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 31.82 | 44.12 |
| AT1G75540.1 | Thale cress | nucleus | 43.33 | 43.2 |
| PGSC0003DMT400079507 | Potato | nucleus | 31.82 | 41.67 |
| Os02t0646200-01 | Rice | nucleus | 33.94 | 41.64 |
| Os04t0540200-01 | Rice | nucleus | 31.21 | 41.2 |
| Zm00001d025957_P001 | Maize | nucleus | 31.82 | 41.02 |
| Zm00001d002806_P001 | Maize | nucleus | 31.82 | 40.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.94 | 40.29 |
| OQU82040 | Sorghum | nucleus | 32.12 | 40.0 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 30.91 | 39.53 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 31.21 | 39.31 |
| GSMUA_Achr11P... | Banana | nucleus | 31.21 | 39.31 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 31.21 | 38.87 |
| Zm00001d051309_P001 | Maize | nucleus | 30.91 | 36.82 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 30.3 | 36.36 |
| EES07539 | Sorghum | nucleus | 32.42 | 36.27 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 31.21 | 36.14 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 30.3 | 35.09 |
| Zm00001d036418_P001 | Maize | nucleus | 27.88 | 34.2 |
| PGSC0003DMT400069498 | Potato | nucleus | 23.94 | 33.91 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 31.82 | 33.76 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 31.52 | 33.23 |
| Os06t0713000-01 | Rice | nucleus | 30.3 | 32.47 |
| EER90373 | Sorghum | cytosol | 29.09 | 31.48 |
| PGSC0003DMT400009328 | Potato | cytosol | 16.97 | 30.77 |
| PGSC0003DMT400018196 | Potato | nucleus | 27.27 | 30.2 |
| PGSC0003DMT400048964 | Potato | nucleus | 26.97 | 29.77 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.61 | 28.45 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 33.33 | 28.06 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 31.21 | 26.89 |
| PGSC0003DMT400008044 | Potato | cytosol | 15.76 | 24.53 |
Protein Annotations
| EntrezGene:102590610 | MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | EMBL:KX576526 | UniProt:M1CVJ9 |
| PFAM:PF00643 | EnsemblPlantsGene:PGSC0003DMG400029426 | PGSC:PGSC0003DMG400029426 | EnsemblPlants:PGSC0003DMT400075652 | PFscan:PS50119 | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF6 | SMART:SM00336 | UniParc:UPI0002962AF7 | RefSeq:XP_006342575.1 | InterPro:Znf_B-box | SEG:seg |
Description
Salt-tolerance protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029426]
Coordinates
chr12:+:56979384..56982591
Molecular Weight (calculated)
36492.9 Da
IEP (calculated)
7.369
GRAVY (calculated)
-0.512
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCNK KEAVVFCTAD EAALCDDCDH RVHHVNKLAS KHQRFSLLQP SPKQAPMCDI CQERRGFLFC QQDRAIMCRE CDIPIHKANE HTQKHNRYLL
101: TGIKLSANSD LYSAPSQLQS QSQSQSAISS ADLCVSNLKS QNPISKSVAG SVSVSSTNTS NTKGGAVSSV VESVKVVKEK VGGCNNNVQL VNGGGNNLTS
201: SISEYLEMLP GWHVEDFLDC STPNVYSKNI GDEDMLSFWD TDLESQLSSF PPQNVGIWVP QAPPLPESKQ ETQIQFFPSQ NLNFGGKIGL KESREVTNIK
301: SSRKWTDDNS FAVPQMKPPS TSFKRSRTLW
101: TGIKLSANSD LYSAPSQLQS QSQSQSAISS ADLCVSNLKS QNPISKSVAG SVSVSSTNTS NTKGGAVSSV VESVKVVKEK VGGCNNNVQL VNGGGNNLTS
201: SISEYLEMLP GWHVEDFLDC STPNVYSKNI GDEDMLSFWD TDLESQLSSF PPQNVGIWVP QAPPLPESKQ ETQIQFFPSQ NLNFGGKIGL KESREVTNIK
301: SSRKWTDDNS FAVPQMKPPS TSFKRSRTLW
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.