Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G75540.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 17965270 |
| AT1G75540.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 17965270 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G239300.1 | Wheat | nucleus | 96.64 | 97.46 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 95.38 | 95.38 |
| Os02t0646200-01 | Rice | nucleus | 78.99 | 69.89 |
| Zm00001d017412_P001 | Maize | nucleus | 41.6 | 69.72 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 66.81 | 60.69 |
| Zm00001d051309_P001 | Maize | nucleus | 68.91 | 59.21 |
| EES07539 | Sorghum | nucleus | 71.43 | 57.63 |
| Solyc01g110180.2.1 | Tomato | nucleus | 37.82 | 44.34 |
| CDY41957 | Canola | nucleus | 36.55 | 41.04 |
| KRH51757 | Soybean | nucleus | 40.76 | 39.59 |
| KRH51476 | Soybean | nucleus | 38.24 | 39.06 |
| Bra011879.1-P | Field mustard | nucleus | 37.82 | 37.66 |
| CDY42602 | Canola | nucleus | 36.97 | 37.61 |
| KRH17384 | Soybean | nucleus | 43.28 | 37.32 |
| CDX90306 | Canola | nucleus | 36.97 | 36.51 |
| Bra010713.1-P | Field mustard | nucleus | 36.97 | 36.51 |
| CDY12117 | Canola | nucleus | 36.97 | 36.36 |
| AT4G39070.1 | Thale cress | cytosol | 36.55 | 35.95 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 45.38 | 35.64 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 42.44 | 35.44 |
| KRH61078 | Soybean | nucleus | 39.5 | 35.34 |
| PGSC0003DMT400079507 | Potato | nucleus | 37.4 | 35.32 |
| Solyc04g081020.2.1 | Tomato | nucleus | 43.7 | 34.78 |
| PGSC0003DMT400009514 | Potato | nucleus | 43.28 | 34.56 |
| Bra008204.1-P | Field mustard | nucleus | 43.7 | 34.44 |
| VIT_03s0038g00340.t01 | Wine grape | nucleus | 42.86 | 33.77 |
| CDY39040 | Canola | nucleus | 41.18 | 33.33 |
| KRH29378 | Soybean | nucleus | 40.34 | 33.33 |
| CDY13564 | Canola | nucleus | 41.6 | 32.67 |
| CDY47514 | Canola | nucleus | 43.28 | 32.09 |
| Bra015835.1-P | Field mustard | nucleus | 43.28 | 32.09 |
| PGSC0003DMT400075652 | Potato | nucleus | 44.12 | 31.82 |
| KRH05902 | Soybean | nucleus | 43.7 | 31.8 |
| TraesCS6D01G133100.1 | Wheat | nucleus | 28.57 | 31.78 |
| CDX73178 | Canola | nucleus | 42.86 | 31.68 |
| Solyc12g089240.1.1 | Tomato | nucleus | 43.7 | 31.61 |
| CDX85903 | Canola | nucleus | 41.6 | 31.03 |
| CDX68124 | Canola | nucleus | 41.6 | 31.03 |
| Bra003748.1-P | Field mustard | nucleus | 41.18 | 30.72 |
| KRH24393 | Soybean | nucleus | 26.05 | 30.24 |
| AT1G75540.1 | Thale cress | nucleus | 41.6 | 29.91 |
| KRH60788 | Soybean | nucleus | 37.82 | 28.21 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.25 | 27.91 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 29.83 | 27.31 |
| TraesCS5D01G323400.1 | Wheat | cytosol | 22.69 | 25.59 |
| TraesCS3D01G139600.1 | Wheat | nucleus | 34.03 | 23.21 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 34.87 | 22.86 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G221700.1 | EnsemblPlantsGene:TraesCS6D01G221700 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31832 |
| PANTHER:PTHR31832:SF28 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | TIGR:cd00021 |
| MapMan:15.5.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:312763272..312764439
Molecular Weight (calculated)
25259.3 Da
IEP (calculated)
6.159
GRAVY (calculated)
-0.337
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVQCDVCAA DAASVFCCAD EAALCDACDR RVHRANKLAG KHRRFSLLNP SPSSASPSQM PPPLCDICQE KRGFLFCKED RAILCRECDV SVHTASELSM
101: RHARFLLTGV RVSSEPAASP APPPSEEENT SSHCCSGDDD AHGASSGSSI SEYLTKTLPG WHVEDFLVDD ATAAAAAAAA SAGFSSGGSY QGVGTPNFAL
201: HDAGYPAGWT RQEHWVPQMY AELAGGKRSR TSAANPHW
101: RHARFLLTGV RVSSEPAASP APPPSEEENT SSHCCSGDDD AHGASSGSSI SEYLTKTLPG WHVEDFLVDD ATAAAAAAAA SAGFSSGGSY QGVGTPNFAL
201: HDAGYPAGWT RQEHWVPQMY AELAGGKRSR TSAANPHW
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Arabidopsis Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.