Factsheet for Solyc04g081020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g005950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	Solyc12g005950.1.1	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009514	Potato	nucleus	94.65	94.97
KRH17384	Soybean	nucleus	51.51	55.8
Solyc12g089240.1.1	Tomato	nucleus	61.2	55.62
VIT_18s0001g13520.t01	Wine grape	nucleus	56.19	55.45
KRH51757	Soybean	nucleus	44.15	53.88
Solyc01g110180.2.1	Tomato	nucleus	35.12	51.72
KRH61078	Soybean	nucleus	45.15	50.75
GSMUA_Achr9P20930_001	Banana	cytosol	31.44	50.54
Zm00001d017412_P001	Maize	nucleus	23.41	49.3
GSMUA_Achr11P...	Banana	cytosol	32.44	48.99
GSMUA_Achr4P05180_001	Banana	cytosol	33.11	48.77
Bra008204.1-P	Field mustard	nucleus	48.83	48.34
GSMUA_Achr11P...	Banana	nucleus	29.77	48.11
KRH05902	Soybean	nucleus	52.51	48.01
CDY13564	Canola	nucleus	48.49	47.85
CDY39040	Canola	nucleus	46.49	47.28
CDY47514	Canola	nucleus	50.17	46.73
Bra015835.1-P	Field mustard	nucleus	50.17	46.73
Solyc02g084420.2.1	Tomato	cytosol	13.71	46.59
CDX68124	Canola	nucleus	49.5	46.4
CDX73178	Canola	nucleus	49.83	46.27
Bra003748.1-P	Field mustard	nucleus	49.16	46.08
CDX85903	Canola	nucleus	49.16	46.08
TraesCS6A01G239300.1	Wheat	nucleus	34.78	44.07
AT1G75540.1	Thale cress	nucleus	48.49	43.81
TraesCS6B01G285200.1	Wheat	nucleus	34.78	43.7
TraesCS6D01G221700.1	Wheat	nucleus	34.78	43.7
GSMUA_AchrUn_...	Banana	nucleus	40.13	43.17
Os04t0540200-01	Rice	nucleus	35.79	42.8
GSMUA_Achr11P...	Banana	nucleus	37.46	42.75
TraesCS2A01G388500.1	Wheat	nucleus	35.79	41.47
TraesCS2D01G386300.1	Wheat	nucleus	36.12	41.22
Zm00001d002806_P001	Maize	nucleus	35.12	40.7
Zm00001d025957_P001	Maize	nucleus	34.78	40.62
TraesCS2B01G406600.2	Wheat	nucleus	35.79	40.38
Os02t0646200-01	Rice	nucleus	35.79	39.78
OQU82040	Sorghum	nucleus	34.45	38.87
Zm00001d051309_P001	Maize	nucleus	34.78	37.55
EES07539	Sorghum	nucleus	36.79	37.29
TraesCS7D01G379900.1	Wheat	nucleus	34.11	35.79
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	34.11	35.79
HORVU7Hr1G091180.1	Barley	nucleus	32.44	35.27
Solyc06g073180.2.1	Tomato	nucleus	26.42	33.91
TraesCS7B01G286300.1	Wheat	nucleus	34.45	33.12
TraesCS7A01G383400.3	Wheat	nucleus	34.45	32.91
Zm00001d036418_P001	Maize	nucleus	29.43	32.71
Solyc07g062160.2.1	Tomato	nucleus	31.1	31.21
Os06t0713000-01	Rice	nucleus	32.11	31.17
GSMUA_Achr1P07740_001	Banana	nucleus	39.8	30.36
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	28.09	29.79
EER90373	Sorghum	cytosol	29.77	29.18
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	35.45	27.68
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.78	27.61
Solyc01g110370.2.1	Tomato	cytosol	20.07	24.9

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	GO:GO:0046872	InterPro:IPR000315	UniProt:K4BVI1	PFAM:PF00643
PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF6	SMART:SM00336	EnsemblPlantsGene:Solyc04g081020.2	EnsemblPlants:Solyc04g081020.2.1
UniParc:UPI0002765C93	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:65084026..65085324

Molecular Weight (calculated)

33261.0 Da

IEP (calculated)

7.607

GRAVY (calculated)

-0.472

Length

299 amino acids

Sequence
(BLAST)

001: MKIQCDVCNN NEASVFCVAD EAALCDSCDH RVHHANKLAS KHQRFSLIQP SPKQIPVCDI CQERRAFLFC QQDRAILCRE CDVSIHKANE HTQKHNRFLL
101: TGVKISANSS LYTSSESVSA ASCSANQDSV TNLNKPQICT KKTSPVSGSV PQQQVSVAAN IGENSYTSSI SEYLEMLPGW HVEELLNAST IPTNGFCKIG
201: DNDVFPIWDS EIESSMNSFS PENIGIWVPQ APPALTPQKN QNQVFPRNIN FGGQIEFKNM KEVTSKKSSR KWRDDNSFAV PQISPSSSSI SFKRSRTLW

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.