Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036075 | Potato | nucleus | 95.57 | 99.08 |
| AT2G32950.1 | Thale cress | nucleus | 76.81 | 77.04 |
| CDY52540 | Canola | nucleus | 76.66 | 76.66 |
| CDY12145 | Canola | nucleus | 76.51 | 76.63 |
| Bra005541.1-P | Field mustard | nucleus | 75.63 | 76.53 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 75.78 | 75.89 |
| KRH14801 | Soybean | nucleus | 75.04 | 75.26 |
| KRH73341 | Soybean | nucleus | 74.3 | 75.19 |
| GSMUA_Achr3P20130_001 | Banana | nucleus | 72.82 | 72.93 |
| Zm00001d052138_P004 | Maize | nucleus | 72.08 | 71.14 |
| Zm00001d018207_P001 | Maize | nucleus | 71.79 | 70.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.17 | 70.11 |
| Os02t0771100-01 | Rice | nucleus | 70.9 | 70.07 |
| KXG31183 | Sorghum | nucleus, plastid | 71.94 | 70.07 |
| Solyc11g011980.1.1 | Tomato | nucleus | 69.28 | 69.79 |
| TraesCS6B01G356400.1 | Wheat | nucleus | 69.57 | 67.97 |
| TraesCS6D01G305800.1 | Wheat | nucleus | 69.57 | 67.38 |
| TraesCS6A01G326100.1 | Wheat | nucleus | 69.28 | 67.0 |
| Solyc07g063120.2.1 | Tomato | cytosol | 33.53 | 27.35 |
| Solyc11g005190.1.1 | Tomato | cytosol | 14.33 | 26.94 |
| Solyc12g013840.1.1 | Tomato | nucleus | 32.79 | 25.75 |
| Solyc10g011690.2.1 | Tomato | nucleus | 31.17 | 20.71 |
| Solyc08g081990.2.1 | Tomato | cytosol | 31.76 | 20.44 |
Protein Annotations
Description
E3 ubiquitin-protein ligase COP1 [Source:Projected from Arabidopsis thaliana (AT2G32950) UniProtKB/Swiss-Prot;Acc:P43254]
Coordinates
chr12:-:576268..587430
Molecular Weight (calculated)
76483.6 Da
IEP (calculated)
7.078
GRAVY (calculated)
-0.456
Length
677 amino acids
Sequence
(BLAST)
(BLAST)
001: MVESSVGGVV PAVKGEVMRR MGDKEEGGSV TLRDEEVGTV TEWELDRELL CPICMQIIKD AFLTACGHSF CYMCIVTHLH NKSDCPCCSH YLTTSQLYPN
101: FLLDKLLKKT SARQISKTAS PVEQFRHSLE QGSEVSIKEL DALLLMLSEK KRKLEQEEAE RNMQILLDFL QMLRKQKVDE LNEVQHDLQY IKEDLNSVER
201: HRIDLYRARD RYSMKLRMLA DDPIGKKPWS SSTDRNFGGL FSTSRNAPGG LPTGNLTFKK VDSKAQISSP GPQRKDTSIS ELNSQHMSQS GLAVVRKKRV
301: NAQFNDLQEC YLQKRRQLAN KSRVKEEKDA DVVQREGYSE GLADFQSVLS TFTRYSRLRV IAELRHGDLF HSANIVSSIE FDRDDELFAT AGVSRRIKVF
401: DFSSVVNEPA DAHCPVVEMS TRSKLSCLSW NKYTKNHIAS SDYDGIVTVW DVTTRQSVME YEEHEKRAWS VDFSRTEPSM LVSGSDDCKV KVWCTKQEAS
501: VLNIDMKANI CCVKYNPGSS VHIAVGSADH HIHYYDLRNT SQPVHIFSGH RKAVSYVKFL SNNELASAST DSTLRLWDVK DNLPVRTLRG HTNEKNFVGL
601: SVNNEFLSCG SETNEVFVYH KAISKPVTWH RFGSPDIDEA DEDAGSYFIS AVCWKSDSPT MLAANSQGTI KVLVLAA
101: FLLDKLLKKT SARQISKTAS PVEQFRHSLE QGSEVSIKEL DALLLMLSEK KRKLEQEEAE RNMQILLDFL QMLRKQKVDE LNEVQHDLQY IKEDLNSVER
201: HRIDLYRARD RYSMKLRMLA DDPIGKKPWS SSTDRNFGGL FSTSRNAPGG LPTGNLTFKK VDSKAQISSP GPQRKDTSIS ELNSQHMSQS GLAVVRKKRV
301: NAQFNDLQEC YLQKRRQLAN KSRVKEEKDA DVVQREGYSE GLADFQSVLS TFTRYSRLRV IAELRHGDLF HSANIVSSIE FDRDDELFAT AGVSRRIKVF
401: DFSSVVNEPA DAHCPVVEMS TRSKLSCLSW NKYTKNHIAS SDYDGIVTVW DVTTRQSVME YEEHEKRAWS VDFSRTEPSM LVSGSDDCKV KVWCTKQEAS
501: VLNIDMKANI CCVKYNPGSS VHIAVGSADH HIHYYDLRNT SQPVHIFSGH RKAVSYVKFL SNNELASAST DSTLRLWDVK DNLPVRTLRG HTNEKNFVGL
601: SVNNEFLSCG SETNEVFVYH KAISKPVTWH RFGSPDIDEA DEDAGSYFIS AVCWKSDSPT MLAANSQGTI KVLVLAA
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.