Factsheet for VIT_12s0059g01420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0049g00960.t01
VIT_05s0077g00940.t01
VIT_05s0102g00750.t01
VIT_06s0004g00730.t01
VIT_07s0031g02560.t01
VIT_10s0003g03710.t01
VIT_11s0052g01800.t01
VIT_12s0059g01420.t01
VIT_14s0083g00640.t01
VIT_14s0171g00270.t01
VIT_16s0050g00050.t01
VIT_18s0001g05680.t01
VIT_18s0001g13520.t01
VIT_18s0001g14530.t01
VIT_19s0014g02660.t01
VIT_19s0015g01950.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32950.1	VIT_05s0049g00960.t01	AT1G04400.1	11509693
AT2G32950.1	VIT_05s0102g00750.t01	AT1G06040.1	11226162
AT2G32950.1	VIT_19s0014g02660.t01	AT1G53090.1	12887588
AT2G32950.1	VIT_19s0014g02660.t01	AT1G53090.1	18812498
AT2G32950.1	VIT_19s0014g02660.t01	AT1G53090.1	21798944
AT2G32950.1	VIT_18s0001g13520.t01	AT1G75540.1	17965270
AT2G32950.1	VIT_05s0077g00940.t01	AT2G18790.1	11752373
AT2G32950.1	VIT_11s0052g01800.t01	AT2G24790.1	16339850
AT2G32950.1	VIT_05s0102g00750.t01	AT2G31380.1	11226162
AT2G32950.1	VIT_12s0059g01420.t01	AT2G32950.1	18812498
AT2G32950.1	VIT_12s0059g01420.t01	AT2G32950.1	9755158
AT2G32950.1	VIT_06s0004g00730.t01	AT3G13550.1	11877375
AT2G32950.1	VIT_06s0004g00730.t01	AT3G13550.1	16844902
AT2G32950.1	VIT_18s0001g05680.t01	AT4G08920.1	11509693
AT2G32950.1	VIT_18s0001g05680.t01	AT4G08920.1	11752373
AT2G32950.1	VIT_16s0050g00050.t01	AT4G25560.1	12827204
AT2G32950.1	VIT_14s0171g00270.t01	AT5G14250.1	14597662
AT2G32950.1	VIT_14s0083g00640.t01	AT5G15840.1	18296627
AT2G32950.1	VIT_14s0083g00640.t01	AT5G15840.1	18388858
AT2G32950.1	VIT_14s0083g00640.t01	AT5G15850.1	18812498
AT2G32950.1	VIT_10s0003g03710.t01	AT5G46210.1	16844902
AT2G32950.1	VIT_19s0015g01950.t01	AT5G56280.1	14597662
AT2G32950.1	VIT_07s0031g02560.t01	AT5G63860.1	19165148
AT2G32950.1	VIT_18s0001g14530.t01	AT5G64920.1	10488108
AT2G32950.1	VIT_18s0001g14530.t01	AT5G64920.1	12028569
AT2G32950.1	VIT_18s0001g14530.t01	AT5G64920.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021818.1-P	Field mustard	cytosol	13.91	78.99
VIT_10s0523g00030.t01	Wine grape	nucleus	69.38	77.91
CDY19171	Canola	cytosol	28.7	76.98
Solyc12g005950.1.1	Tomato	nucleus	75.89	75.78
PGSC0003DMT400036075	Potato	nucleus	72.63	75.19
AT2G32950.1	Thale cress	nucleus	74.56	74.67
KRH14801	Soybean	nucleus	74.26	74.37
KRH73341	Soybean	nucleus	73.08	73.84
GSMUA_Achr3P20130_001	Banana	nucleus	69.82	69.82
Zm00001d052138_P004	Maize	nucleus	69.53	68.51
Zm00001d018207_P001	Maize	nucleus	69.67	67.97
GSMUA_AchrUn_...	Banana	nucleus	64.2	67.92
Os02t0771100-01	Rice	nucleus	68.64	67.74
KXG31183	Sorghum	nucleus, plastid	69.08	67.19
TraesCS6B01G356400.1	Wheat	nucleus	67.46	65.8
TraesCS6D01G305800.1	Wheat	nucleus	67.46	65.24
TraesCS6A01G326100.1	Wheat	nucleus	67.46	65.14
CDX79494	Canola	cytosol	9.91	65.05
VIT_02s0025g01110.t01	Wine grape	cytosol, plastid	17.46	48.96
VIT_19s0014g02660.t01	Wine grape	nucleus	33.58	24.89
VIT_12s0028g03570.t01	Wine grape	cytosol	31.8	24.08
VIT_15s0046g01310.t01	Wine grape	nucleus	31.95	20.15
VIT_16s0050g00020.t01	Wine grape	cytosol	16.72	14.68
VIT_02s0025g01130.t01	Wine grape	cytosol	14.5	11.85

Protein Annotations

EntrezGene:100248310	wikigene:100248310	MapMan:18.4.16	MapMan:19.2.2.8.3.4.1	Gene3D:2.130.10.10	MapMan:26.1.1.3.3.1
Gene3D:3.30.40.10	ProteinID:AGN75070	ProteinID:AGN75070.1	EMBL:AM488799	ProteinID:CAN71084	ProteinID:CAN71084.1
ProteinID:CBI28869	ProteinID:CBI28869.3	ncoils:Coil	UniProt:D7TEE6	EMBL:FN595765	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009628	GO:GO:0009640	GO:GO:0009641	GO:GO:0009649	GO:GO:0009791
GO:GO:0009987	GO:GO:0010119	GO:GO:0016567	GO:GO:0016604	GO:GO:0016740	GO:GO:0019538
GO:GO:0042802	GO:GO:0046283	GO:GO:0048573	GO:GO:0061630	InterPro:IPR001680	InterPro:IPR001841
InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	EMBL:KC701195	EntrezGene:LOC100248310	wikigene:LOC100248310
PFAM:PF00400	PFAM:PF13923	ScanProsite:PS00518	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50089
PFscan:PS50294	PANTHER:PTHR44080	PANTHER:PTHR44080:SF2	SMART:SM00184	SMART:SM00320	SUPFAM:SSF50978
SUPFAM:SSF57850	UniParc:UPI00015CAEE9	ArrayExpress:VIT_12s0059g01420	EnsemblPlantsGene:VIT_12s0059g01420	EnsemblPlants:VIT_12s0059g01420.t01	unigene:Vvi.25705
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002271415
RefSeq:XP_002271415.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

COP1 [Source:UniProtKB/TrEMBL;Acc:D7TEE6]

Coordinates

chr12:-:6341762..6351809

Molecular Weight (calculated)

76021.1 Da

IEP (calculated)

7.014

GRAVY (calculated)

-0.441

Length

676 amino acids

Sequence
(BLAST)

001: MEEVSTGALV PLVKPVMTPS TSVAPTEATG SADEETAEEV GVSNMDKDSL CPICMQIIKD AFLTACGHSF CYMCIITHLQ NKSDCPCCGV YLTNNQLFPN
101: RLLDKLLKKT SAQQISKTAS PVEQFHHSLE QGCEVSVKEL DTLLSVLTEK KRKMEQDEAE RNMKILMEFL NSLKMQKVDE LNETQNDLQY VKEDINVVER
201: HRIELYRVRD RYSVKLRMHV DDPMATKPRT SLVGKSSSGL VSSSRKIQGG MASGNLQNKQ LDGRGQASSQ SLHRKDALTG LDSQCINQPG VAVVRKKRIH
301: SQFNDLQQCY LQKRRQLVNK PHKQDERNTN VIHREGYSAG LADFQSVLTT FSQYSRLKVI AELRHGDLFH SANIVSSIEF DCDDELFATA GVSRRIKVFD
401: FSSVVNERAE MHCPVVEMST RSKLSCLSWN KCTKNHIASS DYEGIVTVWD VNTRQSVMEY EEHEKRAWSV DFSRTEPSRL VSGSDDCKVK VWCTNQEASV
501: LNIDMKANIC CVKYNPGSSI YIAVGSADHH IHYYDLRNTS HPLHIFSGHK KAVSYVKFLS NNELASASTD STLRLWDVKE NLPVRTFRGH TNEKNFVGLS
601: VNSEYISCGS ETNDVFVYHK EISKPVTWHK FGSPDVDDLD DDVGPYFISA VCWKSDSPTM LTANSQGTIK VLTLSA

Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)

001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.