Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P13690_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 5.94 | 68.83 |
| GSMUA_Achr3P31750_001 | Banana | nucleus | 54.09 | 62.89 |
| VIT_19s0014g02660.t01 | Wine grape | nucleus | 61.14 | 59.87 |
| TraesCS3D01G284500.2 | Wheat | cytosol | 51.06 | 59.22 |
| TraesCS3B01G318600.1 | Wheat | cytosol | 50.95 | 59.17 |
| TraesCS3A01G284700.2 | Wheat | cytosol | 50.84 | 58.58 |
| OQU87453 | Sorghum | cytosol | 49.94 | 58.07 |
| HORVU3Hr1G068840.2 | Barley | cytosol, mitochondrion | 49.38 | 57.72 |
| Zm00001d043592_P004 | Maize | cytosol | 50.62 | 57.14 |
| GSMUA_Achr1P13700_001 | Banana | nucleus | 49.05 | 56.88 |
| VIT_02s0025g01110.t01 | Wine grape | cytosol, plastid | 15.34 | 56.85 |
| Zm00001d011746_P002 | Maize | nucleus | 50.73 | 56.7 |
| Os01t0725800-01 | Rice | nucleus | 36.51 | 51.91 |
| VIT_10s0523g00030.t01 | Wine grape | nucleus | 23.29 | 34.55 |
| VIT_12s0059g01420.t01 | Wine grape | nucleus | 24.08 | 31.8 |
| VIT_15s0046g01310.t01 | Wine grape | nucleus | 35.61 | 29.66 |
| VIT_02s0025g01130.t01 | Wine grape | cytosol | 21.39 | 23.1 |
| VIT_16s0050g00020.t01 | Wine grape | cytosol | 12.65 | 14.68 |
Protein Annotations
| EntrezGene:100253988 | wikigene:100253988 | MapMan:18.4.16 | MapMan:19.2.2.8.3.4.2 | Gene3D:2.130.10.10 | ProteinID:CCB47288 |
| ProteinID:CCB47288.1 | ncoils:Coil | UniProt:F6H5D9 | EMBL:FN595235 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Kinase-like_dom_sf |
| EntrezGene:LOC100253988 | wikigene:LOC100253988 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR44218 | PANTHER:PTHR44218:SF1 | SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF56112 |
| TIGR:TC56438 | UniParc:UPI0002108703 | ArrayExpress:VIT_12s0028g03570 | EnsemblPlantsGene:VIT_12s0028g03570 | EnsemblPlants:VIT_12s0028g03570.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002274192 | RefSeq:XP_002274192.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:4362456..4406238
Molecular Weight (calculated)
99840.4 Da
IEP (calculated)
6.066
GRAVY (calculated)
-0.321
Length
893 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSIVLWCFD LEETGSISPF PRTVFSGDTS DNLRCLFRKS ESQQVRPSCA DLNDNPLGFS GACEDEMEEG HTVRGVERGH VSLRRWLDKP NRSVDLLECL
101: HIFRQIVEIV NLAHSQGVVV HNVRPSCFVM SSSNRVSFIE SASCSSSGSD SYENDFNQHS LPSPQNLQKQ QSRLVTEDYP TEISASGTSR VASGTSQVAS
201: DTSSLQLSAA FALQQLIVEE MEENKLTNSR KIEAEERKKT FPLELILPME ISWYCSPEED EGAPSSFCSD VYRLGVLLFE LFCTFSLTEE KFSTMSNLKH
301: RVLPPHLLLK WPKEASFCLW LLHPQPSTRP KLSEVLHSEF LNEPRDHLEE REALIKLTED IEEQEVLLEF LLQVQQRKLV AADKLHGALS CLSSDIGEVM
401: EQQMILNKKG GSFLKLKRDE LSVFDKVDYP SQCLAGKGSA SLGLRKRIRQ GHDPHCVEDW SEHLDEVQKS ETQSGNQEAI LSKGSRLMKN FKKLESAYFS
501: TRCKPSKPTE KMLTSSPISS TGWGSLVITE GSSVDNLVSK AGYNEGKGSR WINPFLEGLC KYLSFSNLKV RADLKQGDLL NSPNLVCSLS FDRDREFFAT
601: AGVNKKIKIF ECDMILNENR DIHYPVTEMA SQSKLSCICW NGYIKNQIVS SDFEGVVQVW DVSRSQRFME MKEHEKRVWS VDFSLADPTK LASGGDDGAV
701: KLWNINQGGS IGTIKTKANV CCVQFPPDSA RSLAIGSADH KVYCYDLRNT RIPLATLNGH SKTVSYVKFI NSTTLVSAST DSSLKLWDLS TCTSRVLDSP
801: LQTFTGHMNV KNFVGLSISD GYIATGSETN EVFIYHKAFP MPVLSFKFST MDPLSGQNVD DGQQFVSTVC WRGQSTTLLA ANSAGHIKLL EMI
101: HIFRQIVEIV NLAHSQGVVV HNVRPSCFVM SSSNRVSFIE SASCSSSGSD SYENDFNQHS LPSPQNLQKQ QSRLVTEDYP TEISASGTSR VASGTSQVAS
201: DTSSLQLSAA FALQQLIVEE MEENKLTNSR KIEAEERKKT FPLELILPME ISWYCSPEED EGAPSSFCSD VYRLGVLLFE LFCTFSLTEE KFSTMSNLKH
301: RVLPPHLLLK WPKEASFCLW LLHPQPSTRP KLSEVLHSEF LNEPRDHLEE REALIKLTED IEEQEVLLEF LLQVQQRKLV AADKLHGALS CLSSDIGEVM
401: EQQMILNKKG GSFLKLKRDE LSVFDKVDYP SQCLAGKGSA SLGLRKRIRQ GHDPHCVEDW SEHLDEVQKS ETQSGNQEAI LSKGSRLMKN FKKLESAYFS
501: TRCKPSKPTE KMLTSSPISS TGWGSLVITE GSSVDNLVSK AGYNEGKGSR WINPFLEGLC KYLSFSNLKV RADLKQGDLL NSPNLVCSLS FDRDREFFAT
601: AGVNKKIKIF ECDMILNENR DIHYPVTEMA SQSKLSCICW NGYIKNQIVS SDFEGVVQVW DVSRSQRFME MKEHEKRVWS VDFSLADPTK LASGGDDGAV
701: KLWNINQGGS IGTIKTKANV CCVQFPPDSA RSLAIGSADH KVYCYDLRNT RIPLATLNGH SKTVSYVKFI NSTTLVSAST DSSLKLWDLS TCTSRVLDSP
801: LQTFTGHMNV KNFVGLSISD GYIATGSETN EVFIYHKAFP MPVLSFKFST MDPLSGQNVD DGQQFVSTVC WRGQSTTLLA ANSAGHIKLL EMI
001: MEGSSNSNSR GFNTSGVSDR NTEFLPVERL TTRSKPSSHV DEYVRSLFGS TSTHKSGEDD SLGIDPFVRS LEWGDVSLRQ WLDKPERSVD VFECLHVFRQ
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT
101: IVEIVNAAHS QGIVVHNVRP SCFVMSSFNH VSFIESASCS DSGSDSLEDG PISQKEIGSS RREEAVSKAI AIEEKGVYNK LLERKIEKLE EEKTQPFPMK
201: HILAMETSWY TSPEEDFGSS STCASDVYRL GVLLFELFCP VPSREEKSRT MSSLRHRVLP PQILLKCPKE ASFCLWLLHP EPTCRPSMSD LLQSEFITEP
301: RDNLEEREAA IELRDRIEEQ ESLLEFLLLI QQRKQESAYR LQDTVSLLSS DIEQVVKRQL ILKKRGSSLS DFSKDDHQYT SGQPLMSFQA NEEPSAFLAS
401: RKRVRQGILA LENGVEVDEE SQGSTLLESS RLMRNFKKLE SVYFLTRRRQ MKAAASGKSL TRHSPLSSEN GRGSMIVSEK SSVSNPVAPK AFFNNDSRQG
501: GWIDPFLEGL CRYLSFSQLR VKADLKQGDL LNSSNLVCAL AFDREGELFA TAGVNKKIKI FECNSIVNDN RDIHYPVVEL AGRSKLSSLC WNSYIKSQIA
601: SSNFDGVVQI WDVARSQLVT EMKEHKKRVW SIDISSADPT LLASGSDDGT VKLWSINQGV SIGTIKTKAN VCCVQFPSDS GRSLAFGSAD HKVYYYDLRN
701: PKIPLCTMIG HSKTVSYVKF VDSSTLVSSS TDNTLKLWDL SMSASGINES PLHSFTGHTN LKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVMSYMFN
801: NTDSMSGLEV DDASQFISSI CWRGQSSTLV AANSNGNIKI LEMMT
Arabidopsis Description
SPA3Protein SPA1-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.