Factsheet for VIT_16s0050g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026485.1-P	Field mustard	cytosol	16.88	65.66
CDX87159	Canola	cytosol	30.91	64.32
CDY16865	Canola	nucleus	30.91	64.15
AT5G23730.1	Thale cress	nucleus	30.65	64.13
Bra029131.1-P	Field mustard	cytosol	27.27	61.05
PGSC0003DMT400015453	Potato	cytosol	28.7	59.73
Solyc11g005190.1.1	Tomato	cytosol	27.66	59.17
CDY38909	Canola	cytosol	27.01	59.09
CDY32590	Canola	cytosol	26.88	58.47
AT5G52250.1	Thale cress	cytosol, plastid	28.05	56.1
GSMUA_Achr9P23670_001	Banana	cytosol	18.31	54.23
GSMUA_Achr4P11950_001	Banana	mitochondrion	18.31	47.32
TraesCS6A01G039200.1	Wheat	plastid	22.21	41.91
TraesCS6D01G045000.1	Wheat	plastid	22.21	41.91
TraesCS6B01G054100.1	Wheat	plastid	22.08	41.46
Zm00001d014990_P001	Maize	cytosol	21.82	40.38
OQU84205	Sorghum	plastid	23.51	36.42
VIT_02s0025g01110.t01	Wine grape	cytosol, plastid	11.3	36.1
VIT_10s0523g00030.t01	Wine grape	nucleus	14.16	18.11
VIT_12s0059g01420.t01	Wine grape	nucleus	14.68	16.72
VIT_19s0014g02660.t01	Wine grape	nucleus	15.32	12.94
VIT_12s0028g03570.t01	Wine grape	cytosol	14.68	12.65
VIT_15s0046g01310.t01	Wine grape	nucleus	15.06	10.82
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.39	5.17
VIT_02s0025g01130.t01	Wine grape	cytosol	4.29	3.99

Protein Annotations

EntrezGene:100257557	wikigene:100257557	EntrezGene:100262691	wikigene:100262691	MapMan:18.4.16	Gene3D:2.130.10.10
MapMan:26.1.3.3	ProteinID:CCB47896	ProteinID:CCB47896.1	UniProt:F6H6Q3	EMBL:FN595243	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100257557
wikigene:LOC100257557	EntrezGene:LOC100262691	wikigene:LOC100262691	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
SMART:SM00320	SUPFAM:SSF50978	TIGR:TC55094	UniParc:UPI0002108721	ArrayExpress:VIT_16s0050g00020	EnsemblPlantsGene:VIT_16s0050g00020
EnsemblPlants:VIT_16s0050g00020.t01	unigene:Vvi.4086	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002267663	RefSeq:XP_002267663.1	RefSeq:XP_002267709	RefSeq:XP_002267709.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:16867341..16874676

Molecular Weight (calculated)

85676.4 Da

IEP (calculated)

6.071

GRAVY (calculated)

-0.447

Length

770 amino acids

Sequence
(BLAST)

001: MKNFSTQFNP QSPEVENPNI QEEKAEQHIE EERARCDWEF NLSTVVTSSS TGASTDTIGV IEFDPSDNLV ATGGIARKIR VYSVKSLLPG ENHSHGEHNV
101: KLLQHNNACD YYIWTPAKLS SLRWKPGSSG RVLGSGDYDG VVTEYDLDRK IPIFERDEHG GRRIWSVDYS HWNPFVGASG SDDGTIQMWD PRCEGTTNVA
201: KVRPSAGGGA VCCVEFNPFG GPLVAVGCAD RRAYGYDVRK MVDPVLIFDG HQKPVTYVRF LDEHMMVTSG TDGCLRLWSM HDARMIRVYM GHMNTRNFVG
301: LSVWRTGGLL GCGSENNHVF VYDKRWSEPI WVHEFGGGSR DGCDPKFVSS VCWRQVGKDV CTLVAGGSDG SLQAKDSTTA VTSYEWEMKN FSTRFNPQGS
401: EVENPNIQEE KREQHIEEER ARRDWEFSLS TVVSSSSDGA STDTIGIIEF DPSDNLVVTG GIARKIRVYS IKSFLSDENH SHGERKVTWL QHNDACDYYV
501: CTPAKLSSLR WKPGSAGRVL GSGDYDGVVT EYDLDQKIPI FERDEHGGRR IWSVDYSHWD PFVGASGSDD GTMQMWDPRC EGIKNVAKVR PSGGGSAVCC
601: VEFNPFGGPL IAVGCADRRA YGYDVRKMVD PVLIFDGHQK TVTYVRFLDQ HTMVTSGTDG CLRLWSMHDA RMIRVYMGHM NTRSFVGLSV WRTGGLLGCG
701: SENNHVFVYD KRWGEPIWVH EFGVGSRDGR DPNFVSSVCW RQVGGEDGCT LVAGGSDGIL EVIVGKKKAF

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.