Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026485.1-P | Field mustard | cytosol | 52.17 | 96.97 |
| CDY16865 | Canola | nucleus | 92.39 | 91.64 |
| CDX87159 | Canola | cytosol | 90.76 | 90.27 |
| AT5G52250.1 | Thale cress | cytosol, plastid | 60.33 | 57.66 |
| PGSC0003DMT400015453 | Potato | cytosol | 56.52 | 56.22 |
| Solyc11g005190.1.1 | Tomato | cytosol | 54.89 | 56.11 |
| GSMUA_Achr9P23670_001 | Banana | cytosol | 38.32 | 54.23 |
| GSMUA_Achr4P11950_001 | Banana | mitochondrion | 38.32 | 47.32 |
| Zm00001d014990_P001 | Maize | cytosol | 45.38 | 40.14 |
| TraesCS6D01G045000.1 | Wheat | plastid | 44.02 | 39.71 |
| TraesCS6A01G039200.1 | Wheat | plastid | 43.75 | 39.46 |
| TraesCS6B01G054100.1 | Wheat | plastid | 42.93 | 38.54 |
| OQU84205 | Sorghum | plastid | 45.38 | 33.6 |
| VIT_16s0050g00020.t01 | Wine grape | cytosol | 64.13 | 30.65 |
| AT2G32950.1 | Thale cress | nucleus | 30.43 | 16.59 |
| AT1G53090.1 | Thale cress | nucleus | 32.61 | 15.11 |
| AT3G15354.3 | Thale cress | nucleus | 33.15 | 14.44 |
| AT4G11110.1 | Thale cress | nucleus | 33.15 | 11.78 |
| AT2G46340.2 | Thale cress | nucleus | 32.07 | 11.47 |
| Os12t0558133-00 | Rice | endoplasmic reticulum, extracellular | 0.54 | 3.45 |
Protein Annotations
| MapMan:18.4.16 | Gene3D:2.130.10.10 | MapMan:26.1.3.3 | EntrezGene:832438 | ProteinID:AED93205.1 | ArrayExpress:AT5G23730 |
| EnsemblPlantsGene:AT5G23730 | RefSeq:AT5G23730 | TAIR:AT5G23730 | RefSeq:AT5G23730-TAIR-G | EnsemblPlants:AT5G23730.1 | TAIR:AT5G23730.1 |
| EMBL:AY039941 | Unigene:At.8740 | ProteinID:BAB10046.1 | EMBL:BT015119 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009658 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010224 | GO:GO:0016043 | GO:GO:0043496 |
| GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | RefSeq:NP_568435.2 | PFAM:PF00400 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR45389 | UniProt:Q9FFA7 | Symbol:RUP2 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000009FF37 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
Coordinates
chr5:+:8005097..8006630
Molecular Weight (calculated)
40003.9 Da
IEP (calculated)
6.755
GRAVY (calculated)
-0.331
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.