CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026485.1-P	Field mustard	cytosol	53.24	99.49
CDY16865	Canola	nucleus	97.03	96.77
AT5G23730.1	Thale cress	nucleus	90.27	90.76
CDY38909	Canola	cytosol	57.57	60.51
CDY32590	Canola	cytosol	57.57	60.17
PGSC0003DMT400015453	Potato	cytosol	56.49	56.49
Solyc11g005190.1.1	Tomato	cytosol	54.86	56.39
GSMUA_Achr9P23670_001	Banana	cytosol	37.57	53.46
GSMUA_Achr4P11950_001	Banana	mitochondrion	37.84	46.98
Zm00001d014990_P001	Maize	cytosol	45.41	40.38
TraesCS6D01G045000.1	Wheat	plastid	44.05	39.95
TraesCS6A01G039200.1	Wheat	plastid	43.78	39.71
TraesCS6B01G054100.1	Wheat	plastid	42.97	38.78
OQU84205	Sorghum	plastid	45.68	34.0
CDY19171	Canola	cytosol	22.43	32.94
VIT_16s0050g00020.t01	Wine grape	cytosol	64.32	30.91
CDX79494	Canola	cytosol	7.84	28.16
CDY52540	Canola	nucleus	30.81	16.84
CDY12145	Canola	nucleus	30.54	16.72
CDY50512	Canola	nucleus	32.7	16.4
CDY20122	Canola	nucleus	31.35	14.72
CDX97654	Canola	nucleus, plastid	31.35	14.59
CDY21834	Canola	nucleus, plastid	31.08	14.54
CDX98548	Canola	nucleus, plastid	31.08	14.48
CDX83371	Canola	nucleus	32.43	13.44
CDX95691	Canola	nucleus	31.35	12.69
CDX86817	Canola	nucleus	32.43	12.38
CDY42035	Canola	nucleus	32.7	12.31
CDY40851	Canola	nucleus	32.7	12.31
CDX80009	Canola	nucleus	32.43	12.12
CDY25880	Canola	nucleus	4.59	3.69
Os12t0558133-00	Rice	endoplasmic reticulum, extracellular	0.27	1.72

Protein Annotations

MapMan:18.4.16	Gene3D:2.130.10.10	MapMan:26.1.3.3	EnsemblPlants:CDX87159	ProteinID:CDX87159	ProteinID:CDX87159.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00146080001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45389
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EEE7A4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

BnaC09g04740D

Coordinates

chrLK031849:-:836302..837414

Molecular Weight (calculated)

40237.1 Da

IEP (calculated)

6.395

GRAVY (calculated)

-0.341

Length

370 amino acids

Sequence
(BLAST)

001: MNTHRTQKQE EEQEEEEARH EWDLSLSTVV SSSSSSASDV VGAIEFDPTD NILATAGISR KIRFYGLTSL LRTTAGICGG AGGGVNFVDQ TNACEYYICT
101: PAKLSSLRWR PGACGRVIGS GDYDGVVTEY DLEKRTPVFE RDEHGGRRVW SVDYTRHGGA AAVGASGSDD GTMQVWDPRC PPEESVGVVR PAGLCRSAVC
201: CVEFDPSGGH AVAVGCADRR GYVYDMRKLV DPALTLQGHT KTVSYVRFLD GGTVVTAGTD GCLKLWSVED GRVIRTYEGH VNNRNFVGLS VWRNGALFGC
301: GSENNRVFVY DRRWRKPVWV DGFEPVGMTS GSEKRFVSSV CWRQSGVDQC TLVAGGSDGV LQVYVGKRKP

Best Arabidopsis Sequence Match ( AT5G23730.1 )
(BLAST)

001: MNTLHPHKQQ QEQAQQQEEA RYEWDLSLST VVSSSSSSAS DVIGAIEFDP TDNIVATAGI SRKIRFYGLP SLLRNNAVSG TGVSFVDQAT ACEYYICTPA
101: KLSSLRWRPG SGGRVIGSGD YDGVVMEYDL EKRTPVFERD EHGGRRVWSV DYTRHGGAST VGASGSDDGT MQVWDPRCPP EESVGVVRPA GICRSAVCCV
201: EFDPSGGPAV AVGCADRKGY VYDIRKLVDP ALTLQGHTKT VSYVRFLDGG TVVTAGTDGC LKLWSVEDGR VIRTYEGHVN NRNFVGLSVW RNGALFGCGS
301: ENNRVFVYDR RWGKPVWVDG FEPVGMNSGS DKRFVSSVCW RQSGVDQCTL VAGGSDGVLQ VYVGKRKP

Arabidopsis Description

RUP2WD repeat-containing protein RUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.