CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68124
CDX69493
CDX69494
CDX70553
CDX75131
CDX75900
CDX77644
CDX78568
CDX78656
CDX81201
CDX81263
CDX82382
CDX84451
CDX85529
CDX85608
CDX85903
CDX86539
CDX86636
CDX87735
CDX89413
CDX89827
CDX89982
CDX90969
CDX91076
CDX92112
CDX92718
CDX94440
CDX94665
CDX95888
CDY03235
CDY06194
CDY09992
CDY10800
CDY12145
CDY15232
CDY15382
CDY15503
CDY15558
CDY18229
CDY18690
CDY19093
CDY23617
CDY25880
CDY26433
CDY26469
CDY26470
CDY31347
CDY32333
CDY32456
CDY32798
CDY33461
CDY35152
CDY36171
CDY39843
CDY43762
CDY43957
CDY45597
CDY49389
CDY50197
CDY50512
CDY52540
CDY54706
CDY55316
CDY56613
CDY59253
CDY60046
CDY68603

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32950.1	CDX89982	AT1G02340.1	15741320
AT2G32950.1	CDY15232	AT1G02340.1	15741320
AT2G32950.1	CDY32456	AT1G02340.1	15741320
AT2G32950.1	CDY55316	AT1G02340.1	15741320
AT2G32950.1	CDX89982	AT1G02340.1	17699755
AT2G32950.1	CDY15232	AT1G02340.1	17699755
AT2G32950.1	CDY32456	AT1G02340.1	17699755
AT2G32950.1	CDY55316	AT1G02340.1	17699755
AT2G32950.1	CDX86636	AT1G04400.1	11509693
AT2G32950.1	CDX89827	AT1G04400.1	11509693
AT2G32950.1	CDY15503	AT1G04400.1	11509693
AT2G32950.1	CDY18229	AT1G04400.1	11509693
AT2G32950.1	CDX86539	AT1G06040.1	11226162
AT2G32950.1	CDY06194	AT1G06040.1	11226162
AT2G32950.1	CDY09992	AT1G06040.1	11226162
AT2G32950.1	CDY15558	AT1G06040.1	11226162
AT2G32950.1	CDY25880	AT1G53090.1	12887588
AT2G32950.1	CDY50512	AT1G53090.1	12887588
AT2G32950.1	CDY25880	AT1G53090.1	18812498
AT2G32950.1	CDY50512	AT1G53090.1	18812498
AT2G32950.1	CDY25880	AT1G53090.1	21798944
AT2G32950.1	CDY50512	AT1G53090.1	21798944
AT2G32950.1	CDX68124	AT1G75540.1	17965270
AT2G32950.1	CDX85903	AT1G75540.1	17965270
AT2G32950.1	CDX75900	AT2G18790.1	11752373
AT2G32950.1	CDX82382	AT2G18790.1	11752373
AT2G32950.1	CDX92112	AT2G18790.1	11752373
AT2G32950.1	CDX95888	AT2G18790.1	11752373
AT2G32950.1	CDY36171	AT2G24790.1	16339850
AT2G32950.1	CDY45597	AT2G24790.1	16339850
AT2G32950.1	CDY10800	AT2G31380.1	11226162
AT2G32950.1	CDY15382	AT2G31380.1	11226162
AT2G32950.1	CDY19093	AT2G31380.1	11226162
AT2G32950.1	CDY56613	AT2G31380.1	11226162
AT2G32950.1	CDY12145	AT2G32950.1	18812498
AT2G32950.1	CDY52540	AT2G32950.1	18812498
AT2G32950.1	CDY12145	AT2G32950.1	9755158
AT2G32950.1	CDY52540	AT2G32950.1	9755158
AT2G32950.1	CDY23617	AT3G13550.1	11877375
AT2G32950.1	CDY59253	AT3G13550.1	11877375
AT2G32950.1	CDY23617	AT3G13550.1	16844902
AT2G32950.1	CDY59253	AT3G13550.1	16844902
AT2G32950.1	CDX75131	AT4G08920.1	11509693
AT2G32950.1	CDY54706	AT4G08920.1	11509693
AT2G32950.1	CDX75131	AT4G08920.1	11752373
AT2G32950.1	CDY54706	AT4G08920.1	11752373
AT2G32950.1	CDX89413	AT4G25560.1	12827204
AT2G32950.1	CDX92718	AT4G25560.1	12827204
AT2G32950.1	CDX94440	AT4G25560.1	12827204
AT2G32950.1	CDY50197	AT4G25560.1	12827204
AT2G32950.1	CDX70553	AT5G14250.1	14597662
AT2G32950.1	CDX78568	AT5G14250.1	14597662
AT2G32950.1	CDX78656	AT5G14250.1	14597662
AT2G32950.1	CDX85608	AT5G14250.1	14597662
AT2G32950.1	CDX91076	AT5G14250.1	14597662
AT2G32950.1	CDY26433	AT5G14250.1	14597662
AT2G32950.1	CDX69494	AT5G15840.1	18296627
AT2G32950.1	CDY26469	AT5G15840.1	18296627
AT2G32950.1	CDX69494	AT5G15840.1	18388858
AT2G32950.1	CDY26469	AT5G15840.1	18388858
AT2G32950.1	CDX69493	AT5G15850.1	18812498
AT2G32950.1	CDX85529	AT5G15850.1	18812498
AT2G32950.1	CDX90969	AT5G15850.1	18812498
AT2G32950.1	CDY26470	AT5G15850.1	18812498
AT2G32950.1	CDX77644	AT5G46210.1	16844902
AT2G32950.1	CDX87735	AT5G46210.1	16844902
AT2G32950.1	CDY03235	AT5G46210.1	16844902
AT2G32950.1	CDY33461	AT5G46210.1	16844902
AT2G32950.1	CDY35152	AT5G46210.1	16844902
AT2G32950.1	CDY43957	AT5G46210.1	16844902
AT2G32950.1	CDY32798	AT5G56280.1	14597662
AT2G32950.1	CDY49389	AT5G56280.1	14597662
AT2G32950.1	CDX81201	AT5G63860.1	19165148
AT2G32950.1	CDX84451	AT5G63860.1	19165148
AT2G32950.1	CDY31347	AT5G63860.1	19165148
AT2G32950.1	CDY39843	AT5G63860.1	19165148
AT2G32950.1	CDY43762	AT5G63860.1	19165148
AT2G32950.1	CDY60046	AT5G63860.1	19165148
AT2G32950.1	CDX81263	AT5G64920.1	10488108
AT2G32950.1	CDX94665	AT5G64920.1	10488108
AT2G32950.1	CDY18690	AT5G64920.1	10488108
AT2G32950.1	CDY32333	AT5G64920.1	10488108
AT2G32950.1	CDY68603	AT5G64920.1	10488108
AT2G32950.1	CDX81263	AT5G64920.1	12028569
AT2G32950.1	CDX94665	AT5G64920.1	12028569
AT2G32950.1	CDY18690	AT5G64920.1	12028569
AT2G32950.1	CDY32333	AT5G64920.1	12028569
AT2G32950.1	CDY68603	AT5G64920.1	12028569
AT2G32950.1	CDX81263	AT5G64920.1	12827204
AT2G32950.1	CDX94665	AT5G64920.1	12827204
AT2G32950.1	CDY18690	AT5G64920.1	12827204
AT2G32950.1	CDY32333	AT5G64920.1	12827204
AT2G32950.1	CDY68603	AT5G64920.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005541.1-P	Field mustard	nucleus	97.34	98.36
CDY52540	Canola	nucleus	98.37	98.23
AT2G32950.1	Thale cress	nucleus	94.08	94.22
CDY19171	Canola	cytosol	32.99	88.49
KRH14801	Soybean	nucleus	76.78	76.89
KRH73341	Soybean	nucleus	75.74	76.53
Solyc12g005950.1.1	Tomato	nucleus	76.63	76.51
PGSC0003DMT400036075	Potato	nucleus	73.37	75.96
GSMUA_Achr3P20130_001	Banana	nucleus	70.56	70.56
CDX79494	Canola	cytosol	10.65	69.9
Zm00001d052138_P004	Maize	nucleus	70.27	69.24
GSMUA_AchrUn_...	Banana	nucleus	65.38	69.17
Os02t0771100-01	Rice	nucleus	69.97	69.05
Zm00001d018207_P001	Maize	nucleus	70.12	68.4
KXG31183	Sorghum	nucleus, plastid	70.27	68.35
TraesCS6B01G356400.1	Wheat	nucleus	68.93	67.24
TraesCS6A01G326100.1	Wheat	nucleus	69.38	67.0
TraesCS6D01G305800.1	Wheat	nucleus	69.08	66.81
CDY16865	Canola	nucleus	17.01	31.0
CDY38909	Canola	cytosol	15.98	30.68
CDX87159	Canola	cytosol	16.72	30.54
CDY32590	Canola	cytosol	15.98	30.51
CDY50512	Canola	nucleus	30.92	28.32
CDY21834	Canola	nucleus, plastid	31.21	26.68
CDY20122	Canola	nucleus	30.77	26.4
CDX97654	Canola	nucleus, plastid	30.62	26.04
CDX98548	Canola	nucleus, plastid	30.47	25.94
CDX83371	Canola	nucleus	30.03	22.73
CDX95691	Canola	nucleus	29.29	21.66
CDY42035	Canola	nucleus	30.62	21.06
CDX80009	Canola	nucleus	30.62	20.91
CDY40851	Canola	nucleus	30.03	20.65
CDX86817	Canola	nucleus	29.29	20.43
CDY25880	Canola	nucleus	10.65	15.62

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:18.4.16	MapMan:19.2.2.8.3.4.1	Gene3D:2.130.10.10
MapMan:26.1.1.3.3.1	Gene3D:3.30.40.10	GO:A0A078FCQ0	UniProt:A0A078FCQ0	EnsemblPlants:CDY12145	ProteinID:CDY12145
ProteinID:CDY12145.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00061144001
InterPro:IPR001680	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF13923	ScanProsite:PS00518	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50089	PFscan:PS50294
PANTHER:PTHR44080	PANTHER:PTHR44080:SF2	SMART:SM00184	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF57850
UniPathway:UPA00143	UniParc:UPI0001F3D6CF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

BnaC04g11750DBnaC04g11750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCQ0]

Coordinates

chrLK032018:-:804..5042

Molecular Weight (calculated)

76307.0 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.550

Length

676 amino acids

Sequence
(BLAST)

001: MEEIRKDPLV PAVKPDPRTS SIGEGPNRRH ENDEGGSGGL EIGAPDLDKD LLCPICMQVI KDAFLTACGH SFCYMCIITH LKNKSDCPCC SQHLTNKQLY
101: PNFLLDKLLK KTSARHVSKT ASPLDQFRDA LQRGCDVSIK EVDNLLTLLA EKKRKMEQEE AERNMQILLD FLHCLRKQKV DELNEVQTDL QYIKEDINAV
201: ERHRIDLYRA RDRYSVKLRM LGDDPSTRNA WPPEKSHTGF NSNSLSIRGG NPPANFQNKK VEGKAQGSSH GISKKDAQSG SDSQSLNQSS VSMARKKRIH
301: AQFSDLQECY LQKRRQLVDQ PHSNQESDNS VVRREGYSYG LADFQSVLTT FTRYSRLRVI AEIRHGDIFH SANIVSSIEF DRDDELFATA GVSRCIKVFD
401: FSSVVNEPAD IQCPIVEMST RSKLSCLSWN KHEKNHIASS DYEGIVTVWD VTTRQSLMEY EEHEKRAWSV DFSRTEPSML VSGSDDCKVK VWCTKQEASV
501: LNIDMKANIC CVKYNPGSSN FIAVGSADHH IHYYDLRNIS QPLHVFSGHK KAVSYVKFLS NNELASASTD STLRLWDVKD NLPVRTFRGH TNEKNFVGLT
601: VNSEYLACGS ETNEVYVYHK EITKPVTSHR FGSLDMEEAE EEAGSYFISA VCWKSDSPTM LTANSQGTIK VLVLAA

Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)

001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA

Arabidopsis Description

COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.