CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90616
CDY12145
CDY29066
CDY52540

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	CDY12145	AT2G32950.1	10488108
AT5G64920.1	CDY52540	AT2G32950.1	10488108
AT5G64920.1	CDY12145	AT2G32950.1	12028569
AT5G64920.1	CDY52540	AT2G32950.1	12028569
AT5G64920.1	CDY12145	AT2G32950.1	12827204
AT5G64920.1	CDY52540	AT2G32950.1	12827204
AT5G64920.1	CDX90616	AT3G52155.1	21798944
AT5G64920.1	CDY29066	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030136.1-P	Field mustard	cytosol	100.0	100.0
CDX94665	Canola	nucleus	92.15	94.89
CDY32333	Canola	cytosol	64.46	66.38
CDX81263	Canola	cytosol, peroxisome, plastid	42.98	35.86
CDY18690	Canola	cytosol, peroxisome, plastid	42.98	34.78
AT5G64920.1	Thale cress	cytosol	43.39	31.44
KRG90607	Soybean	nucleus	40.08	28.78
KRH36150	Soybean	nucleus	38.02	27.63
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	35.54	25.75
Solyc09g074460.1.1	Tomato	nucleus	38.02	24.4
PGSC0003DMT400081469	Potato	nucleus	37.19	23.81
CDY36069	Canola	cytosol	20.66	23.04
CDY43991	Canola	nucleus	28.93	22.65
CDX82271	Canola	cytosol	19.83	22.54
CDY72364	Canola	cytosol	19.83	21.62
CDY26096	Canola	nucleus	26.03	21.43
CDX75998	Canola	nucleus	16.94	21.35
CDY10554	Canola	cytosol	26.86	21.31
CDY50031	Canola	cytosol	25.21	21.03
CDY46577	Canola	nucleus	24.79	20.62
CDY28208	Canola	cytosol	19.42	20.26
CDY56022	Canola	nucleus	26.03	20.13
CDY56080	Canola	cytosol	23.55	20.07
CDX99105	Canola	cytosol, plastid	26.86	20.06
CDY56081	Canola	nucleus	19.42	19.67
CDY22790	Canola	nucleus	21.9	19.63
CDY08249	Canola	cytosol	26.45	19.1
CDX92768	Canola	nucleus	24.38	19.09
CDY61251	Canola	cytosol	28.1	18.84
CDY22483	Canola	mitochondrion	23.55	18.81
CDX89343	Canola	cytosol, mitochondrion	27.27	18.75
CDY33046	Canola	plastid	26.45	18.71
CDX72127	Canola	mitochondrion	24.38	18.67
CDY27204	Canola	mitochondrion, nucleus	23.97	18.59
CDX79968	Canola	mitochondrion, nucleus	22.73	18.52
CDY33437	Canola	cytosol	24.79	18.52
CDY24592	Canola	nucleus	24.38	18.38
CDY25360	Canola	cytosol, nucleus, plastid	24.38	18.27
CDY20473	Canola	nucleus, plastid	25.21	18.26
CDX92770	Canola	nucleus	24.38	18.21
CDY23878	Canola	mitochondrion, nucleus	22.73	18.03
CDX80258	Canola	plastid	26.45	18.03
CDY42740	Canola	nucleus	23.97	18.01
CDY35437	Canola	mitochondrion, nucleus	23.55	17.98
CDY07641	Canola	nucleus	27.69	17.91
CDX74839	Canola	cytosol, plastid	23.97	17.9
CDY24951	Canola	nucleus	27.69	17.87
CDX94342	Canola	mitochondrion, nucleus	28.1	17.57
CDY53450	Canola	cytosol	23.14	17.39
CDY48679	Canola	cytosol, plastid	23.97	17.37
CDX74533	Canola	cytosol	20.66	17.12
CDX88709	Canola	cytosol, plastid	27.69	17.01
CDY32791	Canola	nucleus	24.38	16.76
CDY69134	Canola	cytosol	19.83	16.49
CDX78323	Canola	cytosol	19.42	16.32
CDY34722	Canola	cytosol	25.21	15.64
CDY42507	Canola	cytosol	21.9	15.63
CDY01669	Canola	plastid	20.66	15.48
CDY34721	Canola	cytosol	24.79	15.38
CDX90972	Canola	cytosol	20.66	14.93
CDX94901	Canola	cytosol	19.01	14.65
CDY01221	Canola	cytosol	12.81	14.22
CDY26465	Canola	cytosol	19.83	14.16
CDX85531	Canola	cytosol	19.83	13.99
CDX69973	Canola	cytosol	20.66	13.89
CDX69496	Canola	cytosol	16.53	13.89
CDY21513	Canola	cytosol	19.83	13.48
CDY58938	Canola	nucleus	23.97	13.15
CDY03622	Canola	nucleus	23.97	13.0
CDY02194	Canola	peroxisome	20.25	12.31
CDY51628	Canola	peroxisome	20.25	12.07
CDY23599	Canola	golgi, mitochondrion	28.93	11.49
CDY11934	Canola	nucleus	28.1	10.43

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078JM68	UniProt:A0A078JM68	EnsemblPlants:CDY68603	ProteinID:CDY68603
ProteinID:CDY68603.1	EnsemblPlantsGene:GSBRNA2T00076007001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000254103D
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaAnng27780DBnaAnng27780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM68]

Coordinates

chrLK037644:-:1677..2405

Molecular Weight (calculated)

27312.0 Da

IEP (calculated)

7.482

GRAVY (calculated)

-0.647

Length

242 amino acids

Sequence
(BLAST)

001: MSDAQESYWC YRCFKHVAVR TLDDEVLCCE CNNGFVRLIQ AIPAAHSTEI EVQSYGLHQR RESNLERVIN RLWSRHEASP PNTLERVADN IGGRRGAPPA
101: AKSAVEALET FEVGSTSSEE GERTAVMCAV CKDAMVMSEI GKKLPCGHFY HDNCILPWLE TRNSCPVCRF QLPTDDLRYE RKRAREEPHL TVSAGASSVS
201: AGASSSSLMS EREENNNHHV FETRRRTSRK GRPNRYTGHF AH

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.