CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002559.1-P	Field mustard	plastid	97.18	86.9
CDY33046	Canola	plastid	82.82	85.96
CDY48679	Canola	cytosol, plastid	71.55	76.05
CDY53450	Canola	cytosol	68.17	75.16
CDX88709	Canola	cytosol, plastid	82.54	74.37
CDY61251	Canola	cytosol	72.11	70.91
CDX99105	Canola	cytosol, plastid	60.28	66.05
AT5G59550.2	Thale cress	nucleus, plastid	84.51	58.59
GSMUA_Achr7P15040_001	Banana	mitochondrion	46.76	52.53
Os03t0271600-01	Rice	plastid	40.28	51.25
KRH10229	Soybean	nucleus	45.07	50.96
KRH23103	Soybean	nucleus	45.07	50.96
EER95109	Sorghum	plastid	39.44	50.91
Zm00001d028590_P001	Maize	plastid	39.44	50.36
Zm00001d047824_P001	Maize	plastid	39.44	50.36
TraesCS4A01G095800.1	Wheat	cytosol	39.72	50.36
TraesCS4B01G209100.1	Wheat	plastid	39.72	50.36
TraesCS4D01G209500.1	Wheat	plastid	39.72	50.36
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	45.35	46.8
GSMUA_Achr10P...	Banana	mitochondrion	43.94	46.29
KRH29763	Soybean	nucleus	46.76	45.98
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	49.86	45.85
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	45.07	45.58
KRH24759	Soybean	nucleus	46.2	45.43
Solyc06g005650.2.1	Tomato	extracellular	25.35	45.0
GSMUA_Achr2P19140_001	Banana	mitochondrion	44.79	43.92
CDY20473	Canola	nucleus, plastid	41.13	43.71
GSMUA_Achr5P07070_001	Banana	nucleus	39.72	42.86
Zm00001d035677_P001	Maize	plastid	41.97	42.82
CDX74839	Canola	cytosol, plastid	38.87	42.59
PGSC0003DMT400005512	Potato	mitochondrion	45.92	42.23
TraesCS3D01G532300.1	Wheat	cytosol	45.92	42.23
Os05t0110000-01	Rice	mitochondrion	39.44	42.04
TraesCS3B01G595200.1	Wheat	cytosol	46.48	41.35
CDY07641	Canola	nucleus	43.38	41.18
HORVU7Hr1G055010.1	Barley	cytosol	25.63	41.18
TraesCS1A01G029800.1	Wheat	cytosol	45.92	40.85
CDY24951	Canola	nucleus	43.1	40.8
TraesCS1D01G030300.1	Wheat	nucleus	46.2	40.8
TraesCS1B01G036900.1	Wheat	cytosol	45.63	40.6
HORVU1Hr1G004330.14	Barley	cytosol	45.63	40.4
HORVU4Hr1G060130.1	Barley	cytosol	40.0	40.34
GSMUA_Achr10P...	Banana	mitochondrion	45.35	40.05
EES17560	Sorghum	plastid	46.48	39.95
Zm00001d011076_P001	Maize	plastid	42.54	39.02
GSMUA_Achr10P...	Banana	nucleus	30.99	39.01
HORVU3Hr1G041030.1	Barley	mitochondrion	40.0	36.69
Os01t0972000-01	Rice	nucleus	32.96	35.03
HORVU3Hr1G115000.7	Barley	mitochondrion	37.46	33.93
CDY36069	Canola	cytosol	20.56	33.64
CDX82271	Canola	cytosol	19.44	32.39
CDY72364	Canola	cytosol	19.72	31.53
CDY46577	Canola	nucleus	22.82	27.84
CDY22483	Canola	mitochondrion	23.38	27.39
CDY24592	Canola	nucleus	24.51	27.1
CDX75998	Canola	nucleus	14.65	27.08
CDY10554	Canola	cytosol	23.1	26.89
CDY27204	Canola	mitochondrion, nucleus	23.38	26.6
CDY23878	Canola	mitochondrion, nucleus	22.82	26.56
CDY68603	Canola	cytosol	18.03	26.45
CDX94665	Canola	nucleus	17.46	26.38
CDY01669	Canola	plastid	23.94	26.32
CDX72127	Canola	mitochondrion	23.38	26.27
CDY33437	Canola	cytosol	23.94	26.23
CDY35437	Canola	mitochondrion, nucleus	23.38	26.18
CDX74533	Canola	cytosol	21.41	26.03
CDY25360	Canola	cytosol, nucleus, plastid	23.66	26.01
CDY56022	Canola	nucleus	22.54	25.56
CDX79968	Canola	mitochondrion, nucleus	21.13	25.25
CDY26096	Canola	nucleus	20.56	24.83
CDY32333	Canola	cytosol	16.34	24.68
CDY50031	Canola	cytosol	20.0	24.48
CDY43991	Canola	nucleus	21.13	24.27
CDY22790	Canola	nucleus	18.31	24.07
CDY56080	Canola	cytosol	18.87	23.59
CDY56081	Canola	nucleus	15.77	23.43
CDX92768	Canola	nucleus	20.28	23.3
CDY08249	Canola	cytosol	21.69	22.99
CDY32791	Canola	nucleus	22.54	22.73
CDX94901	Canola	cytosol	20.0	22.61
CDX81263	Canola	cytosol, peroxisome, plastid	18.31	22.41
CDY42740	Canola	nucleus	20.28	22.36
CDX92770	Canola	nucleus	20.28	22.22
CDX89343	Canola	cytosol, mitochondrion	21.69	21.88
CDY18690	Canola	cytosol, peroxisome, plastid	18.31	21.74
CDY28208	Canola	cytosol	13.52	20.69
CDY42507	Canola	cytosol	19.72	20.65
CDX94342	Canola	mitochondrion, nucleus	21.97	20.16
CDY01221	Canola	cytosol	11.55	18.81
CDY03622	Canola	nucleus	20.56	16.37
CDY58938	Canola	nucleus	20.28	16.33
CDY02194	Canola	peroxisome	18.03	16.08
CDY51628	Canola	peroxisome	18.31	16.01
CDY69134	Canola	cytosol	12.68	15.46
CDX78323	Canola	cytosol	12.11	14.93
CDX69973	Canola	cytosol	14.65	14.44
CDY21513	Canola	cytosol	14.37	14.33
CDX90972	Canola	cytosol	12.96	13.73
CDY34722	Canola	cytosol	14.93	13.59
CDY26465	Canola	cytosol	12.96	13.57
CDX69496	Canola	cytosol	10.99	13.54
CDY34721	Canola	cytosol	14.65	13.33
CDX85531	Canola	cytosol	12.68	13.12
CDY11934	Canola	nucleus	23.38	12.73
CDY23599	Canola	golgi, mitochondrion	21.41	12.48

Protein Annotations

EnsemblPlants:CDX80258	EnsemblPlantsGene:GSBRNA2T00133239001	Gene3D:3.30.40.10	GO:A0A078CYS2	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	ProteinID:CDX80258	ProteinID:CDX80258.1	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE3832	MapMan:35.1	:	:

Description

BnaC09g34840D

Coordinates

chrLK031820:+:934828..936124

Molecular Weight (calculated)

38191.5 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.443

Length

355 amino acids

Sequence
(BLAST)

001: MPSSSPSTTI TTPPATASYW CYSCTRFVSV WSESEQGTTV SVACPHCDGG FIEEVTDASS VIRRRRSSRR PSFNPVIVLQ GGAGERVDSE EGDRRAFEFY
101: YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASGA GIGRSGNPPA SKSAIESLPR VEISDCHISA EANCAVCTEV FEAETEAREM PCKHIFHDDC
201: ITPWLSIRNS CPVCRFELPS EPNRRSSSNN DEGDNAVGMT IWRLPGGGFA VGRFNAAMGE GERVLPVVLT EMDGGGIGGN SEGPRRISWV RAQGTVESDS
301: SNGGGSGSGG RLRRMVRGMV SLMRRVRPNR GSNSSSSNRV DLDIQVEPRD SSVLH

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.