CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035677_P001	Maize	plastid	71.43	84.77
Zm00001d011076_P001	Maize	plastid	76.51	81.65
Os05t0110000-01	Rice	mitochondrion	62.23	77.18
TraesCS1B01G036900.1	Wheat	cytosol	68.28	70.68
TraesCS1D01G030300.1	Wheat	nucleus	68.52	70.4
HORVU1Hr1G004330.14	Barley	cytosol	68.28	70.32
TraesCS1A01G029800.1	Wheat	cytosol	67.8	70.18
EER95109	Sorghum	plastid	40.44	60.73
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	48.18	56.7
Os01t0972000-01	Rice	nucleus	43.58	53.89
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	44.55	53.49
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	49.88	53.37
KRH23103	Soybean	nucleus	40.44	53.18
KRH10229	Soybean	nucleus	40.19	52.87
KRH29763	Soybean	nucleus	46.0	52.63
KRH24759	Soybean	nucleus	45.76	52.35
Solyc04g011610.1.1	Tomato	nucleus	48.67	50.89
PGSC0003DMT400016233	Potato	nucleus	48.43	50.76
KRG97885	Soybean	mitochondrion	43.83	50.7
PGSC0003DMT400005512	Potato	mitochondrion	46.0	49.22
CDY20473	Canola	nucleus, plastid	39.71	49.1
Solyc06g005650.2.1	Tomato	extracellular	23.73	49.0
KRH30994	Soybean	nucleus	46.25	48.6
Bra005020.1-P	Field mustard	nucleus, plastid	38.98	47.21
CDY53450	Canola	cytosol	36.56	46.89
CDX74839	Canola	cytosol, plastid	36.56	46.6
CDX80258	Canola	plastid	39.95	46.48
Bra000143.1-P	Field mustard	nucleus	41.89	46.13
CDY07641	Canola	nucleus	41.65	45.99
CDY24951	Canola	nucleus	41.4	45.6
Bra020313.1-P	Field mustard	plastid	42.62	45.24
Bra006709.1-P	Field mustard	plastid	42.86	45.04
CDX88709	Canola	cytosol, plastid	42.86	44.92
CDY61251	Canola	cytosol	38.74	44.32
Bra002559.1-P	Field mustard	plastid	41.89	43.58
CDY48679	Canola	cytosol, plastid	35.11	43.41
CDY33046	Canola	plastid	35.59	42.98
KRH15082	Soybean	nucleus	39.71	42.93
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.74	42.9
CDX99105	Canola	cytosol, plastid	32.93	41.98
KRH73053	Soybean	nucleus	39.47	41.69
AT2G39720.2	Thale cress	nucleus	40.44	41.65
AT3G46620.1	Thale cress	cytosol, plastid	39.23	41.01
AT5G59550.2	Thale cress	nucleus, plastid	41.16	33.2
EER92269	Sorghum	nucleus	20.82	30.18
EER89027	Sorghum	nucleus	21.79	28.04
EER89401	Sorghum	mitochondrion, nucleus	21.31	26.35
KXG33564	Sorghum	mitochondrion	18.89	25.83
KXG39475	Sorghum	cytosol	18.64	23.99
OQU85475	Sorghum	cytosol	18.4	23.75
EER90075	Sorghum	nucleus	16.95	23.1
EES00577	Sorghum	nucleus	19.61	22.56
KXG31176	Sorghum	plastid	18.89	21.91
EES14331	Sorghum	plastid	15.5	21.84
KXG37275	Sorghum	nucleus	18.16	19.58
KXG22238	Sorghum	plastid	17.68	18.77
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	14.77	15.76

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8067315	UniProt:C5YYG0	InterPro:DUF1117	EnsemblPlants:EES17560
ProteinID:EES17560	ProteinID:EES17560.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184
EnsemblPlantsGene:SORBI_3009G010400	SUPFAM:SSF57850	unigene:Sbi.4490	UniParc:UPI0001A88C98	RefSeq:XP_002439130.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:976274..981130

Molecular Weight (calculated)

43640.7 Da

IEP (calculated)

7.647

GRAVY (calculated)

-0.450

Length

413 amino acids

Sequence
(BLAST)

001: MATPSSPSPT HSPTSSSSSY WCYQCDRFVR ATAAPASPAC PSCGGGFLEE MGAPPPPRPA YLRRHRAHNH HHHHHHHHHH IAAAAADLRP RRARRGASGS
101: TDSRASPFNP VIVLRRSPPT TAADGSSSPT ATAGGSTFEL FYDDGAGSGL RPLPDSMSDF LMGSGFERLL DQLAQIEAGG LAAARARDAP PASKAAVESM
201: PVVSVGASHV AADAHCAVCK EAFELGAEAR EMPCAHIYHA DCILPWLAIR NSCPVCRHEM PTDATPRAAA NAGAAGEEEE ATVGLTIWRL PGGGFAVGRF
301: AGGRRPEERE LPVVYTEMDG GFNSGGAGAP RRISWGSRQT ASTDRGTVRR FLRNVFACFG GRGSAASRSH AMPELDDDDA SDHSAAFSRG GSRSRSTSWR
401: LEDGHAADAM VQR

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.