CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30994	Soybean	nucleus	94.4	85.75
GSMUA_Achr7P15040_001	Banana	mitochondrion	52.1	58.86
GSMUA_Achr10P...	Banana	mitochondrion	53.78	56.97
EER95109	Sorghum	plastid	42.3	54.91
Os03t0271600-01	Rice	plastid	42.86	54.84
TraesCS4A01G095800.1	Wheat	cytosol	42.86	54.64
Zm00001d047824_P001	Maize	plastid	42.3	54.32
Zm00001d028590_P001	Maize	plastid	42.3	54.32
TraesCS4D01G209500.1	Wheat	plastid	42.58	54.29
TraesCS4B01G209100.1	Wheat	plastid	42.58	54.29
Solyc04g011610.1.1	Tomato	nucleus	59.66	53.92
PGSC0003DMT400016233	Potato	nucleus	59.38	53.81
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	52.66	53.56
KRH10229	Soybean	nucleus	46.78	53.18
KRH24759	Soybean	nucleus	53.5	52.91
KRH23103	Soybean	nucleus	45.94	52.23
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	50.14	52.03
GSMUA_Achr5P07070_001	Banana	nucleus	47.9	51.98
KRH29763	Soybean	nucleus	52.38	51.8
KRH15082	Soybean	nucleus	54.62	51.05
Os05t0110000-01	Rice	mitochondrion	47.06	50.45
TraesCS3D01G532300.1	Wheat	cytosol	53.5	49.48
GSMUA_Achr2P19140_001	Banana	mitochondrion	50.14	49.45
KRH49133	Soybean	plastid	42.3	49.19
KRH73053	Soybean	nucleus	53.78	49.1
KRG99997	Soybean	plastid	42.3	48.4
TraesCS3B01G595200.1	Wheat	cytosol	53.5	47.87
Zm00001d035677_P001	Maize	plastid	46.5	47.7
GSMUA_Achr10P...	Banana	mitochondrion	53.22	47.26
TraesCS1A01G029800.1	Wheat	cytosol	52.38	46.87
TraesCS1B01G036900.1	Wheat	cytosol	52.38	46.87
HORVU1Hr1G004330.14	Barley	cytosol	52.1	46.38
Os01t0972000-01	Rice	nucleus	43.14	46.11
TraesCS1D01G030300.1	Wheat	nucleus	51.82	46.02
Zm00001d011076_P001	Maize	plastid	48.18	44.44
EES17560	Sorghum	plastid	50.7	43.83
HORVU3Hr1G041030.1	Barley	mitochondrion	47.34	43.67
HORVU4Hr1G060130.1	Barley	cytosol	42.58	43.18
HORVU7Hr1G055010.1	Barley	cytosol	25.21	40.72
HORVU3Hr1G115000.7	Barley	mitochondrion	43.98	40.05
GSMUA_Achr10P...	Banana	nucleus	29.69	37.59
KRH71659	Soybean	nucleus	24.37	28.16
KRH33121	Soybean	nucleus	23.81	27.51
KRH14643	Soybean	nucleus	25.49	27.08
KRH18634	Soybean	nucleus	17.65	26.69
KRH36132	Soybean	nucleus	21.29	26.57
KRH18631	Soybean	nucleus	22.69	26.47
KRG90622	Soybean	nucleus	21.29	25.5
KRH38895	Soybean	nucleus	25.77	24.47
KRH09399	Soybean	nucleus	24.93	24.12
KRH73496	Soybean	mitochondrion	24.09	23.18
KRH64713	Soybean	nucleus	22.69	23.01
KRG97316	Soybean	nucleus	21.57	22.38
KRH08483	Soybean	cytosol, nucleus, plastid	20.17	22.36
KRG90607	Soybean	nucleus	20.73	21.96
KRH70139	Soybean	nucleus	19.61	21.94
KRH36150	Soybean	nucleus	20.45	21.92
KRH10441	Soybean	mitochondrion	19.05	21.18
KRH44018	Soybean	mitochondrion	17.65	19.87
KRH18313	Soybean	nucleus	15.41	14.71
KRH40635	Soybean	nucleus, plastid	21.57	13.97
KRG93748	Soybean	nucleus, plastid	14.85	13.95
KRH00522	Soybean	plastid	21.57	13.77
KRH56750	Soybean	cytosol	12.32	12.87
KRH03189	Soybean	nucleus	12.32	12.39

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0R0EVC5	EMBL:ACUP02010821	InterPro:DUF1117	EnsemblPlantsGene:GLYMA_18G037000
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRG97885	ProteinID:KRG97885	ProteinID:KRG97885.1
PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3
SUPFAM:SSF57850	UniParc:UPI0006EDE378	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:2896419..2897545

Molecular Weight (calculated)

39645.6 Da

IEP (calculated)

8.339

GRAVY (calculated)

-0.635

Length

357 amino acids

Sequence
(BLAST)

001: MSSGTSSYWC YRCSRFVRVW PHHTIVCPDC DGGFIEEIEH PPRSVHVDPR GRQRFPAAAM YMIGQRPSSD HPSRPAALRR TRRNGGDRSP VNPVIVLRGG
101: AATAEDESRG FELFYDDGAG SGLRPLPPSM SEFLLGSGFD RLLEQLSQIE INGIGRYEHP PASKAAIDSL PTIEIDDTHL AMEMPCKHIY HPECILPWLA
201: LHNSCPVCRH ELPADTPNPN QNQNPSQNVA LNEEENVGLT IWRLPGGGFA VGRFSGGRRG AERELPVVYT EMDGGFNNGG GEPRRISWSR GNRGRESGGL
301: TRFFRNLFGC FRGSSTQRSA SSRESMRASS SRSSTMDPSL RSRRTWSMDV NSGMRAW

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.