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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G595200.1 Wheat cytosol 98.19 94.99
HORVU7Hr1G055010.1 Barley cytosol 48.7 85.07
HORVU3Hr1G041030.1 Barley mitochondrion 81.61 81.4
HORVU3Hr1G115000.7 Barley mitochondrion 73.58 72.45
TraesCS4D01G209500.1 Wheat plastid 45.34 62.5
TraesCS1D01G030300.1 Wheat nucleus 64.77 62.19
GSMUA_AchrUn_... Banana mitochondrion, plastid 55.96 61.54
GSMUA_Achr6P23590_001 Banana mitochondrion, nucleus 51.04 57.27
VIT_06s0004g05090.t01 Wine grape mitochondrion, nucleus 55.18 55.18
KRH10229 Soybean nucleus 44.56 54.78
KRH23103 Soybean nucleus 44.04 54.14
KRG97885 Soybean mitochondrion 49.48 53.5
KRH29763 Soybean nucleus 48.96 52.35
KRH24759 Soybean nucleus 48.96 52.35
PGSC0003DMT400016233 Potato nucleus 52.59 51.52
Solyc06g005650.2.1 Tomato extracellular 26.68 51.5
Solyc04g011610.1.1 Tomato nucleus 52.59 51.39
PGSC0003DMT400005512 Potato mitochondrion 51.04 51.04
KRH30994 Soybean nucleus 51.3 50.38
CDY20473 Canola nucleus, plastid 43.01 49.7
Bra005020.1-P Field mustard nucleus, plastid 42.75 48.39
CDX74839 Canola cytosol, plastid 40.41 48.15
CDY24951 Canola nucleus 45.08 46.4
Bra000143.1-P Field mustard nucleus 45.08 46.4
CDY07641 Canola nucleus 44.82 46.26
CDX80258 Canola plastid 42.23 45.92
CDY61251 Canola cytosol 42.49 45.43
CDY53450 Canola cytosol 37.82 45.34
Bra019382.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 43.01 44.5
Bra020313.1-P Field mustard plastid 44.56 44.22
Bra006709.1-P Field mustard plastid 44.56 43.77
CDX88709 Canola cytosol, plastid 44.56 43.65
CDY48679 Canola cytosol, plastid 37.56 43.41
Bra002559.1-P Field mustard plastid 44.56 43.32
AT2G39720.2 Thale cress nucleus 44.3 42.64
CDX99105 Canola cytosol, plastid 35.75 42.59
KRH15082 Soybean nucleus 41.71 42.15
CDY33046 Canola plastid 36.79 41.52
AT3G46620.1 Thale cress cytosol, plastid 42.49 41.52
KRH73053 Soybean nucleus 41.97 41.43
AT5G59550.2 Thale cress nucleus, plastid 45.08 33.98
TraesCS3D01G432800.1 Wheat mitochondrion 23.32 31.14
TraesCS7D01G000400.1 Wheat cytosol 22.8 26.67
TraesCS6D01G309800.1 Wheat mitochondrion 21.76 26.42
TraesCS1D01G159200.1 Wheat cytosol, mitochondrion, plastid, vacuole 25.13 26.22
TraesCS3D01G324300.1 Wheat mitochondrion 22.54 25.44
TraesCS7D01G170800.1 Wheat mitochondrion 20.47 24.69
TraesCS7D01G246300.1 Wheat plastid 16.84 24.16
TraesCS1D01G305300.1 Wheat nucleus 19.95 23.19
TraesCS4D01G176700.1 Wheat cytosol 20.73 22.99
TraesCS3D01G192700.1 Wheat cytosol 21.76 22.83
TraesCS5D01G480800.1 Wheat nucleus 23.83 22.77
TraesCS7D01G387300.1 Wheat cytosol 15.8 18.71
TraesCS6D01G160300.1 Wheat nucleus 16.58 18.39
TraesCS5D01G146400.1 Wheat nucleus 17.88 13.58
Protein Annotations
EnsemblPlants:TraesCS3D01G532300.1EnsemblPlantsGene:TraesCS3D01G532300Gene3D:3.30.40.10InterPro:DUF1117InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR44274PANTHER:PTHR44274:SF3PFAM:PF06547PFAM:PF13639
PFAM:PF14369PFscan:PS50089SEG:segSMART:SM00184SUPFAM:SSF57850TIGR:cd16667
MapMan:35.1:::::
Description
No Description!
Coordinates
chr3D:+:608401134..608402294
Molecular Weight (calculated)
41307.2 Da
IEP (calculated)
7.371
GRAVY (calculated)
-0.430
Length
386 amino acids
Sequence
(BLAST)
001: MDRWAAPASY WCYSCERFVR TAGDAGLVCP GCDGGFLEQM DAPPPRRAAA PSAFLRRRAA EAPTEVRPRR GRRGGAASGD RSGSPYNPVI VLRRSAAPPG
101: DEAPGATSSF ELFYDDGAGS GLRPLPESMS DFLMGSGFER LLEQLAQIEA GGFGAVRPCD NPPASKAAVE SMPTVVVAAC HVGADSHCAV CKEAFQLGDE
201: AREMPCSHMY HQDCILPWLA LRNSCPVCRH ELPTDVARPA PASDLGAADD QGSNTGAEAG SEEETTVGLT IWRLPGGGFA VGRFTGGRRA GERELPVVYT
301: EVDGGFNNGG APRRISWSSR GSRSSQRGVI RRMFDNMFAC FGHTHSTNVT RASSSRSEWS SVFTRGLRSR STSWRSQDSH ADAIAR
Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)
001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH
Arabidopsis Description
zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.