Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G595200.1 | Wheat | cytosol | 98.19 | 94.99 |
HORVU7Hr1G055010.1 | Barley | cytosol | 48.7 | 85.07 |
HORVU3Hr1G041030.1 | Barley | mitochondrion | 81.61 | 81.4 |
HORVU3Hr1G115000.7 | Barley | mitochondrion | 73.58 | 72.45 |
TraesCS4D01G209500.1 | Wheat | plastid | 45.34 | 62.5 |
TraesCS1D01G030300.1 | Wheat | nucleus | 64.77 | 62.19 |
GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 55.96 | 61.54 |
GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 51.04 | 57.27 |
VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 55.18 | 55.18 |
KRH10229 | Soybean | nucleus | 44.56 | 54.78 |
KRH23103 | Soybean | nucleus | 44.04 | 54.14 |
KRG97885 | Soybean | mitochondrion | 49.48 | 53.5 |
KRH29763 | Soybean | nucleus | 48.96 | 52.35 |
KRH24759 | Soybean | nucleus | 48.96 | 52.35 |
PGSC0003DMT400016233 | Potato | nucleus | 52.59 | 51.52 |
Solyc06g005650.2.1 | Tomato | extracellular | 26.68 | 51.5 |
Solyc04g011610.1.1 | Tomato | nucleus | 52.59 | 51.39 |
PGSC0003DMT400005512 | Potato | mitochondrion | 51.04 | 51.04 |
KRH30994 | Soybean | nucleus | 51.3 | 50.38 |
CDY20473 | Canola | nucleus, plastid | 43.01 | 49.7 |
Bra005020.1-P | Field mustard | nucleus, plastid | 42.75 | 48.39 |
CDX74839 | Canola | cytosol, plastid | 40.41 | 48.15 |
CDY24951 | Canola | nucleus | 45.08 | 46.4 |
Bra000143.1-P | Field mustard | nucleus | 45.08 | 46.4 |
CDY07641 | Canola | nucleus | 44.82 | 46.26 |
CDX80258 | Canola | plastid | 42.23 | 45.92 |
CDY61251 | Canola | cytosol | 42.49 | 45.43 |
CDY53450 | Canola | cytosol | 37.82 | 45.34 |
Bra019382.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 43.01 | 44.5 |
Bra020313.1-P | Field mustard | plastid | 44.56 | 44.22 |
Bra006709.1-P | Field mustard | plastid | 44.56 | 43.77 |
CDX88709 | Canola | cytosol, plastid | 44.56 | 43.65 |
CDY48679 | Canola | cytosol, plastid | 37.56 | 43.41 |
Bra002559.1-P | Field mustard | plastid | 44.56 | 43.32 |
AT2G39720.2 | Thale cress | nucleus | 44.3 | 42.64 |
CDX99105 | Canola | cytosol, plastid | 35.75 | 42.59 |
KRH15082 | Soybean | nucleus | 41.71 | 42.15 |
CDY33046 | Canola | plastid | 36.79 | 41.52 |
AT3G46620.1 | Thale cress | cytosol, plastid | 42.49 | 41.52 |
KRH73053 | Soybean | nucleus | 41.97 | 41.43 |
AT5G59550.2 | Thale cress | nucleus, plastid | 45.08 | 33.98 |
TraesCS3D01G432800.1 | Wheat | mitochondrion | 23.32 | 31.14 |
TraesCS7D01G000400.1 | Wheat | cytosol | 22.8 | 26.67 |
TraesCS6D01G309800.1 | Wheat | mitochondrion | 21.76 | 26.42 |
TraesCS1D01G159200.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 25.13 | 26.22 |
TraesCS3D01G324300.1 | Wheat | mitochondrion | 22.54 | 25.44 |
TraesCS7D01G170800.1 | Wheat | mitochondrion | 20.47 | 24.69 |
TraesCS7D01G246300.1 | Wheat | plastid | 16.84 | 24.16 |
TraesCS1D01G305300.1 | Wheat | nucleus | 19.95 | 23.19 |
TraesCS4D01G176700.1 | Wheat | cytosol | 20.73 | 22.99 |
TraesCS3D01G192700.1 | Wheat | cytosol | 21.76 | 22.83 |
TraesCS5D01G480800.1 | Wheat | nucleus | 23.83 | 22.77 |
TraesCS7D01G387300.1 | Wheat | cytosol | 15.8 | 18.71 |
TraesCS6D01G160300.1 | Wheat | nucleus | 16.58 | 18.39 |
TraesCS5D01G146400.1 | Wheat | nucleus | 17.88 | 13.58 |
Protein Annotations
EnsemblPlants:TraesCS3D01G532300.1 | EnsemblPlantsGene:TraesCS3D01G532300 | Gene3D:3.30.40.10 | InterPro:DUF1117 | InterPro:IPR001841 | InterPro:IPR013083 |
InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44274 | PANTHER:PTHR44274:SF3 | PFAM:PF06547 | PFAM:PF13639 |
PFAM:PF14369 | PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16667 |
MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:608401134..608402294
Molecular Weight (calculated)
41307.2 Da
IEP (calculated)
7.371
GRAVY (calculated)
-0.430
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRWAAPASY WCYSCERFVR TAGDAGLVCP GCDGGFLEQM DAPPPRRAAA PSAFLRRRAA EAPTEVRPRR GRRGGAASGD RSGSPYNPVI VLRRSAAPPG
101: DEAPGATSSF ELFYDDGAGS GLRPLPESMS DFLMGSGFER LLEQLAQIEA GGFGAVRPCD NPPASKAAVE SMPTVVVAAC HVGADSHCAV CKEAFQLGDE
201: AREMPCSHMY HQDCILPWLA LRNSCPVCRH ELPTDVARPA PASDLGAADD QGSNTGAEAG SEEETTVGLT IWRLPGGGFA VGRFTGGRRA GERELPVVYT
301: EVDGGFNNGG APRRISWSSR GSRSSQRGVI RRMFDNMFAC FGHTHSTNVT RASSSRSEWS SVFTRGLRSR STSWRSQDSH ADAIAR
101: DEAPGATSSF ELFYDDGAGS GLRPLPESMS DFLMGSGFER LLEQLAQIEA GGFGAVRPCD NPPASKAAVE SMPTVVVAAC HVGADSHCAV CKEAFQLGDE
201: AREMPCSHMY HQDCILPWLA LRNSCPVCRH ELPTDVARPA PASDLGAADD QGSNTGAEAG SEEETTVGLT IWRLPGGGFA VGRFTGGRRA GERELPVVYT
301: EVDGGFNNGG APRRISWSSR GSRSSQRGVI RRMFDNMFAC FGHTHSTNVT RASSSRSEWS SVFTRGLRSR STSWRSQDSH ADAIAR
001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH
Arabidopsis Description
zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.