Factsheet for TraesCS1D01G159200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, vacuole, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	99.46	99.46
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	98.38	98.64
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	95.68	96.46
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	74.59	74.59
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	76.49	73.51
Zm00001d032646_P001	Maize	cytosol	70.54	69.6
GSMUA_Achr5P19380_001	Banana	plastid	24.05	46.6
TraesCS7D01G000400.1	Wheat	cytosol	36.76	41.21
TraesCS3D01G432800.1	Wheat	mitochondrion	24.05	30.8
TraesCS4D01G209500.1	Wheat	plastid	21.62	28.57
TraesCS7D01G246300.1	Wheat	plastid	19.73	27.14
TraesCS7D01G170800.1	Wheat	mitochondrion	22.7	26.25
TraesCS6D01G309800.1	Wheat	mitochondrion	22.43	26.1
TraesCS1D01G305300.1	Wheat	nucleus	22.97	25.6
TraesCS3D01G532300.1	Wheat	cytosol	26.22	25.13
TraesCS1D01G030300.1	Wheat	nucleus	27.03	24.88
TraesCS3D01G192700.1	Wheat	cytosol	24.59	24.73
TraesCS4D01G176700.1	Wheat	cytosol	22.97	24.43
TraesCS7D01G387300.1	Wheat	cytosol	19.73	22.39
TraesCS3D01G324300.1	Wheat	mitochondrion	20.54	22.22
TraesCS5D01G480800.1	Wheat	nucleus	22.97	21.04
TraesCS6D01G160300.1	Wheat	nucleus	15.68	16.67
TraesCS5D01G146400.1	Wheat	nucleus	21.62	15.75

Protein Annotations

EnsemblPlants:TraesCS1D01G159200.1	EnsemblPlantsGene:TraesCS1D01G159200	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PANTHER:PTHR44679:SF2	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667	MapMan:35.1	:

Description

No Description!

Coordinates

chr1D:-:224574125..224575237

Molecular Weight (calculated)

38148.9 Da

IEP (calculated)

4.160

GRAVY (calculated)

-0.295

Length

370 amino acids

Sequence
(BLAST)

001: MSTPGAAYYA SLARKQYFCY QCNRTVLIAA SAAAAGELSC PDCRGDFLEE VTVPAPTILP FPFAFPPMMP TASSPSRSSS SSTAAPPSSD LSNFLTSILD
101: LQEGRRVRSR SGSGAASAAG TATPENEPES FDPLVFFQNY IHTLMEGGAN IQVLLDDASV NLAPGPGGRA GGTSYGDYFV GPGLEQLIEQ LAENDPNRYG
201: TPPAAKSALT TLPDVVVTDA MVAAAEGAEC AVCKEDFSPG DGAKQMPCKH IYHADCIVPW LELHNSCPIC RFELPTDDPD YEGNKASNPQ SAVGIAAAAA
301: ASGSSGAAEE GGEESGETAR VVERRFNVSL PWPFGGSAGQ TPQQDGNNAG AGSSSQDSGS QDGAGGSNKN

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.