Factsheet for TraesCS5D01G480800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G467700.1	Wheat	nucleus	99.01	99.01
TraesCS5B01G480100.1	Wheat	nucleus	98.02	98.51
HORVU5Hr1G111530.1	Barley	nucleus	94.55	95.98
Os03t0812200-01	Rice	nucleus	70.3	76.96
KXG37275	Sorghum	nucleus	64.85	68.41
Zm00001d013005_P002	Maize	nucleus	61.39	66.85
GSMUA_Achr11P...	Banana	nucleus	31.93	47.78
CDY46577	Canola	nucleus	33.42	46.39
KRG97316	Soybean	nucleus	37.13	43.6
VIT_06s0004g00120.t01	Wine grape	nucleus	39.11	42.93
Bra027436.1-P	Field mustard	nucleus	32.67	42.72
CDY43991	Canola	nucleus	32.67	42.72
PGSC0003DMT400046527	Potato	nucleus	37.87	42.5
Bra002823.1-P	Field mustard	nucleus	35.89	41.19
CDY32791	Canola	nucleus	35.64	40.91
CDY10554	Canola	cytosol	30.69	40.66
CDX92768	Canola	nucleus	30.94	40.45
Bra030854.1-P	Field mustard	nucleus	30.94	40.06
AT3G13430.2	Thale cress	nucleus	30.94	39.68
AT1G55530.2	Thale cress	nucleus	33.91	39.03
CDY56022	Canola	nucleus	30.2	38.98
AT5G56340.1	Thale cress	nucleus	38.12	38.89
CDX92770	Canola	nucleus	30.94	38.58
TraesCS1D01G305300.1	Wheat	nucleus	31.19	37.95
Bra037109.1-P	Field mustard	nucleus	31.19	37.72
CDY42740	Canola	nucleus	29.95	37.58
CDY26096	Canola	nucleus	27.23	37.41
CDY08249	Canola	cytosol	30.94	37.31
Bra019109.1-P	Field mustard	nucleus	29.7	37.27
AT4G26400.1	Thale cress	nucleus	32.67	37.08
CDY28208	Canola	cytosol	21.29	37.07
Bra011215.1-P	Field mustard	cytosol	21.29	37.07
CDY56080	Canola	cytosol	25.74	36.62
Bra026444.1-P	Field mustard	nucleus	32.92	35.85
CDY50031	Canola	cytosol	25.5	35.52
CDX89343	Canola	cytosol, mitochondrion	30.94	35.51
Bra037999.1-P	Field mustard	nucleus	25.25	35.17
TraesCS3D01G192700.1	Wheat	cytosol	30.94	33.97
CDY56081	Canola	nucleus	20.05	33.89
Solyc01g050040.2.1	Tomato	nucleus	24.01	33.22
CDX94342	Canola	mitochondrion, nucleus	31.19	32.56
TraesCS4D01G176700.1	Wheat	cytosol	27.23	31.61
KRH08483	Soybean	cytosol, nucleus, plastid	24.01	30.12
KRH70139	Soybean	nucleus	23.51	29.78
TraesCS3D01G432800.1	Wheat	mitochondrion	19.31	26.99
TraesCS4D01G209500.1	Wheat	plastid	18.07	26.07
Bra028935.1-P	Field mustard	nucleus	36.63	26.06
TraesCS7D01G000400.1	Wheat	cytosol	21.04	25.76
TraesCS3D01G532300.1	Wheat	cytosol	22.77	23.83
TraesCS7D01G246300.1	Wheat	plastid	15.59	23.42
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	21.04	22.97
CDY11934	Canola	nucleus	36.63	22.7
TraesCS1D01G030300.1	Wheat	nucleus	21.53	21.64
CDY23599	Canola	golgi, mitochondrion	32.43	21.51
TraesCS6D01G309800.1	Wheat	mitochondrion	15.59	19.81
TraesCS7D01G170800.1	Wheat	mitochondrion	15.1	19.06
TraesCS3D01G324300.1	Wheat	mitochondrion	16.09	19.01
TraesCS6D01G160300.1	Wheat	nucleus	13.86	16.09
TraesCS7D01G387300.1	Wheat	cytosol	12.38	15.34
TraesCS5D01G146400.1	Wheat	nucleus	14.6	11.61

Protein Annotations

EnsemblPlants:TraesCS5D01G480800.1	EnsemblPlantsGene:TraesCS5D01G480800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44576	PANTHER:PTHR44576:SF4	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667	MapMan:35.1

Description

No Description!

Coordinates

chr5D:+:518920577..518921791

Molecular Weight (calculated)

45159.5 Da

IEP (calculated)

4.389

GRAVY (calculated)

-1.049

Length

404 amino acids

Sequence
(BLAST)

001: MEEGQESRYW CHSCAEVIVP VEPEKKCPDC DGGFVEEMGS EGFEPSTNVR SERNLSLWAP LLLGMMGGSS RRSRPQRDMM DSSSDEDSRQ ARIRSALRDT
101: DDEDEDDDDD DSDRELEDMI RRRRRRGSSL VRLLQTLRDD LRGLDGIGRD RDRDRDSERD RERERERRDR ERRERERARR ERERARERDR GGERTESLIL
201: INSNNEAIIL QGTFGPSDNQ ENSSNTSTGV SLGDYFLGPG LDMLLQRLAD SDLNRSGTPP AKKESVAALP TVNIQEVLGC TVCLEEFEMG TEAKEMPCQH
301: KFHSNCILPW LELHSSCPIC RFQLPTEESK NPCESGSGGG TVSADGDHAE SSNSDIEGAN HDGGSLLDES SINDRDVTSA LNAIFGDGSS SSSSDENGPR
401: SSES

Best Arabidopsis Sequence Match ( AT1G55530.1 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.