Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P05060_001 | Banana | nucleus | 36.67 | 53.23 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 52.96 | 47.99 |
| GSMUA_Achr10P... | Banana | nucleus | 51.48 | 45.87 |
| CDY46577 | Canola | nucleus | 47.41 | 43.99 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 46.3 | 42.66 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 45.19 | 40.67 |
| KRG97316 | Soybean | nucleus | 50.0 | 39.24 |
| PGSC0003DMT400046527 | Potato | nucleus | 52.22 | 39.17 |
| CDX92768 | Canola | nucleus | 44.81 | 39.16 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 52.59 | 38.59 |
| AT1G55530.2 | Thale cress | nucleus | 50.0 | 38.46 |
| CDY10554 | Canola | cytosol | 42.96 | 38.03 |
| Bra002823.1-P | Field mustard | nucleus | 49.26 | 37.78 |
| CDY32791 | Canola | nucleus | 49.26 | 37.78 |
| CDX92770 | Canola | nucleus | 45.19 | 37.65 |
| Zm00001d010635_P001 | Maize | nucleus | 42.96 | 37.18 |
| CDY42740 | Canola | nucleus | 44.07 | 36.96 |
| Bra030854.1-P | Field mustard | nucleus | 42.59 | 36.86 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 45.19 | 36.75 |
| CDY56022 | Canola | nucleus | 42.59 | 36.74 |
| Bra019109.1-P | Field mustard | nucleus | 43.7 | 36.65 |
| Os03t0812200-01 | Rice | nucleus | 50.0 | 36.59 |
| CDY43991 | Canola | nucleus | 41.85 | 36.57 |
| Bra027436.1-P | Field mustard | nucleus | 41.85 | 36.57 |
| AT4G26400.1 | Thale cress | nucleus | 48.15 | 36.52 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 44.81 | 36.45 |
| CDX89343 | Canola | cytosol, mitochondrion | 47.04 | 36.08 |
| CDY26096 | Canola | nucleus | 39.26 | 36.05 |
| Os05t0488800-01 | Rice | nucleus | 42.96 | 35.91 |
| AT3G13430.2 | Thale cress | nucleus | 41.48 | 35.56 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 24.81 | 35.08 |
| Bra026444.1-P | Field mustard | nucleus | 48.15 | 35.04 |
| Bra037109.1-P | Field mustard | nucleus | 43.33 | 35.03 |
| CDY08249 | Canola | cytosol | 43.33 | 34.93 |
| AT5G56340.1 | Thale cress | nucleus | 51.11 | 34.85 |
| Zm00001d038528_P001 | Maize | cytosol | 41.85 | 33.93 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 48.52 | 32.91 |
| CDX94342 | Canola | mitochondrion, nucleus | 47.04 | 32.82 |
| KXG37275 | Sorghum | nucleus | 46.3 | 32.64 |
| Zm00001d013005_P002 | Maize | nucleus | 44.81 | 32.61 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 48.15 | 32.34 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 47.78 | 31.93 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 47.78 | 31.93 |
| HORVU1Hr1G068950.2 | Barley | golgi | 45.19 | 31.61 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 27.04 | 31.6 |
| Solyc01g050040.2.1 | Tomato | nucleus | 33.7 | 31.16 |
| KXG22238 | Sorghum | plastid | 44.07 | 30.59 |
| CDY50031 | Canola | cytosol | 32.59 | 30.34 |
| CDY56080 | Canola | cytosol | 31.85 | 30.28 |
| Bra037999.1-P | Field mustard | nucleus | 32.22 | 30.0 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 26.67 | 29.27 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 27.41 | 28.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.93 | 27.13 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 30.37 | 25.95 |
| CDY56081 | Canola | nucleus | 22.59 | 25.52 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 30.0 | 25.16 |
| GSMUA_Achr11P... | Banana | mitochondrion | 27.78 | 25.08 |
| Bra011215.1-P | Field mustard | cytosol | 21.48 | 25.0 |
| CDY28208 | Canola | cytosol | 21.48 | 25.0 |
| KRH70139 | Soybean | nucleus | 29.26 | 24.76 |
| Bra028935.1-P | Field mustard | nucleus | 50.0 | 23.77 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 30.74 | 23.65 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 30.37 | 23.36 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 29.26 | 22.97 |
| GSMUA_Achr10P... | Banana | mitochondrion | 28.15 | 22.55 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 27.04 | 22.19 |
| GSMUA_Achr10P... | Banana | nucleus | 22.96 | 21.99 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 28.15 | 20.99 |
| CDY11934 | Canola | nucleus | 49.63 | 20.55 |
| GSMUA_Achr10P... | Banana | mitochondrion | 28.89 | 19.4 |
| CDY23599 | Canola | golgi, mitochondrion | 41.85 | 18.55 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 19.63 | 13.38 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 17.04 | 11.11 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 15.93 | 8.24 |
| GSMUA_Achr11P... | Banana | cytosol | 20.37 | 7.59 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P10480_001 | EnsemblPlants:GSMUA_Achr11T10480_001 | EnsemblPlantsGene:GSMUA_Achr11G10480_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029489F8 | UniProt:M0RR28 | MapMan:35.1 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G10480_001]
Coordinates
chr11:+:8288142..8289518
Molecular Weight (calculated)
29676.9 Da
IEP (calculated)
4.229
GRAVY (calculated)
-0.690
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEAPVGRYW CHACHRVVNP VMEPELKCPF CDDGFVEEME SRGFDDSDST IDSDREEDDD DSDLDREFED FIRRRRRRSA IIQLLQSLQD DLSAGASSGD
101: SFMGSALDML LQHLAENDLN RYGTPPAKKE AIDALPTVKI EETLGCSVCL EDFAIGMEAK EMPCKHKFHR DCILPWLELH SSCPVCRSQL PADDSKVSNG
201: SSNGSRIDET DGDDGDGGDR VGRGDPNRFW VPVPWPFSGL FSLSGSQNGG TSSSNASSSN SGTNTHGEEN
101: SFMGSALDML LQHLAENDLN RYGTPPAKKE AIDALPTVKI EETLGCSVCL EDFAIGMEAK EMPCKHKFHR DCILPWLELH SSCPVCRSQL PADDSKVSNG
201: SSNGSRIDET DGDDGDGGDR VGRGDPNRFW VPVPWPFSGL FSLSGSQNGG TSSSNASSSN SGTNTHGEEN
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGDYFIGPG FEMLLQRLAE NDPNRYGTPP AKKEAVEALA TVKIEETLQC SVCLDDFEIG
201: TEAKLMPCTH KFHSDCLLPW LELHSSCPVC RYQLPADEAK TDSVTTTSDN NGSSSASATT SHGAENSDGN RRQEEEEEEE EEEEEENENN DGSGFSIPWP
301: FSTLFSSSQD SNAPTDSS
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGDYFIGPG FEMLLQRLAE NDPNRYGTPP AKKEAVEALA TVKIEETLQC SVCLDDFEIG
201: TEAKLMPCTH KFHSDCLLPW LELHSSCPVC RYQLPADEAK TDSVTTTSDN NGSSSASATT SHGAENSDGN RRQEEEEEEE EEEEEENENN DGSGFSIPWP
301: FSTLFSSSQD SNAPTDSS
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.