Factsheet for Bra027436.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43991	Canola	nucleus	100.0	100.0
AT3G13430.2	Thale cress	nucleus	72.82	71.43
Bra037109.1-P	Field mustard	nucleus	50.16	46.41
Bra030854.1-P	Field mustard	nucleus	45.95	45.51
Bra002823.1-P	Field mustard	nucleus	48.22	42.33
GSMUA_Achr11P...	Banana	nucleus	36.57	41.85
Bra037999.1-P	Field mustard	nucleus	38.84	41.38
Bra011215.1-P	Field mustard	cytosol	29.45	39.22
Bra026444.1-P	Field mustard	nucleus	46.93	39.08
Bra019109.1-P	Field mustard	nucleus	40.45	38.82
Zm00001d010635_P001	Maize	nucleus	37.22	36.86
Os03t0812200-01	Rice	nucleus	43.37	36.31
Os05t0488800-01	Rice	nucleus	37.86	36.22
TraesCS1D01G305300.1	Wheat	nucleus	36.89	34.34
TraesCS1B01G316300.1	Wheat	nucleus	36.57	34.04
Zm00001d038528_P001	Maize	cytosol	36.57	33.93
Bra001767.1-P	Field mustard	nucleus	23.3	33.64
Zm00001d013005_P002	Maize	nucleus	39.81	33.15
HORVU5Hr1G111530.1	Barley	nucleus	42.39	32.91
TraesCS5B01G480100.1	Wheat	nucleus	42.72	32.84
TraesCS5D01G480800.1	Wheat	nucleus	42.72	32.67
KXG37275	Sorghum	nucleus	40.45	32.64
TraesCS5A01G467700.1	Wheat	nucleus	42.39	32.43
KXG22238	Sorghum	plastid	38.84	30.85
HORVU1Hr1G068950.2	Barley	golgi	37.22	29.79
Bra030136.1-P	Field mustard	cytosol	22.65	28.93
Bra028935.1-P	Field mustard	nucleus	51.78	28.17
Bra038246.1-P	Field mustard	nucleus	26.86	25.54
Bra035835.1-P	Field mustard	nucleus	26.86	25.38
Bra037800.1-P	Field mustard	cytosol	24.27	24.83
Bra014684.1-P	Field mustard	nucleus	13.92	22.4
Bra007253.1-P	Field mustard	mitochondrion, nucleus	22.33	22.26
Bra000207.1-P	Field mustard	mitochondrion, nucleus	22.65	22.08
Bra004589.1-P	Field mustard	nucleus	17.15	21.72
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	24.92	20.64
Bra006709.1-P	Field mustard	plastid	25.57	20.1
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.71	19.69
Bra002559.1-P	Field mustard	plastid	24.92	19.4
Bra020313.1-P	Field mustard	plastid	23.95	19.02
Bra005020.1-P	Field mustard	nucleus, plastid	20.06	18.18
Bra000143.1-P	Field mustard	nucleus	22.01	18.13
Bra008671.1-P	Field mustard	nucleus	13.92	14.98
Bra005970.1-P	Field mustard	cytosol	13.27	14.14
Bra009323.1-P	Field mustard	cytosol	15.86	12.93
Bra014266.1-P	Field mustard	nucleus	18.45	12.93
Bra021467.1-P	Field mustard	nucleus	15.53	12.31
Bra013006.1-P	Field mustard	nucleus	15.53	11.51
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	14.24	11.08

Protein Annotations

EnsemblPlants:Bra027436.1	EnsemblPlants:Bra027436.1-P	EnsemblPlantsGene:Bra027436	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000254807F	UniProt:M4EF74
MapMan:35.1	:	:	:	:	:

Description

AT3G13430 (E=2e-104) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:-:20905678..20906607

Molecular Weight (calculated)

34545.4 Da

IEP (calculated)

3.925

GRAVY (calculated)

-0.709

Length

309 amino acids

Sequence
(BLAST)

001: MEDANAIRYW CHMCSRSVNP VIEGDVINCN FCQSGFVEEM DETPEQATND HPHQASESLW APILLGMMND HDQNQRDSES NVENEDDDDD DDDGQINDGE
101: FDLERHLEEI MRRRRRHSAA ILDLLQGIRA GLSVESENNQ DNNNQDNELV VLINSFNQRI RIQDSVDASA VPSGSLGDYF IGPGFEMLLQ RLAENDPNNR
201: YGTPPATKEA VESLETVMVE ESLVQCTVCL DDFEIGVEAK EMPCKHKFHS ECLLPWLELH SSCPVCRYLL PTGDDDGEAK TDGETSSNVS MENNGTSVDS
301: SSNNPSVND

Best Arabidopsis Sequence Match ( AT3G13430.2 )
(BLAST)

001: MEDASETSYW CHMCSRSVIP LIQDEIIKCN FCQSGFVEEM DNNDDHQAAD SLWTPILMEM MNNNHDQHST NQEDSESILE DEDEDEDDGD DGDQNNDGEI
101: DITHQLEEIR RIRTRHSTAI VNLLQGIRAG LLIESENNED NPDNSELVVL INSFNQRIRV HQDSVDTTSV PSGSLGDYFI GPGFETLLQR LAENDLNNRY
201: GTPPATKEAV EALAMVKIED SLLQCSVCLD DFEIGMEAKE MPCKHKFHSD CLLPWLELHS SCPVCRYLLP TGDDDEPKTD AETSRNDDNN EDISNASMAS
301: NGSSPDSSSN NSSVN

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LJE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.