Factsheet for Bra013006.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02194	Canola	peroxisome	94.24	98.74
AT5G60820.1	Thale cress	cytosol	73.62	73.27
Bra005970.1-P	Field mustard	cytosol	34.05	48.97
Bra009323.1-P	Field mustard	cytosol	39.09	43.01
KRH56750	Soybean	cytosol	31.65	38.6
KRH03189	Soybean	nucleus	32.61	38.31
VIT_17s0000g04730.t01	Wine grape	nucleus	38.61	36.67
PGSC0003DMT400063293	Potato	nucleus	34.53	33.33
Os06t0633500-01	Rice	cytosol, nucleus	8.63	29.03
Solyc03g114680.2.1	Tomato	nucleus	34.29	28.71
Bra008671.1-P	Field mustard	nucleus	19.66	28.57
GSMUA_Achr8P24510_001	Banana	cytosol	23.74	25.0
Bra021467.1-P	Field mustard	nucleus	21.58	23.08
Bra001767.1-P	Field mustard	nucleus	11.51	22.43
Os08t0487500-01	Rice	plastid	14.39	22.14
Bra014684.1-P	Field mustard	nucleus	10.07	21.88
TraesCS7D01G246300.1	Wheat	plastid	13.67	21.19
TraesCS7B01G144100.1	Wheat	plastid	13.67	21.19
TraesCS7A01G247700.1	Wheat	cytosol, plastid	13.43	20.82
Zm00001d031273_P001	Maize	cytosol, plastid	14.39	20.76
EES14331	Sorghum	plastid	14.39	20.48
Bra030136.1-P	Field mustard	cytosol	11.75	20.25
Bra037800.1-P	Field mustard	cytosol	14.63	20.2
TraesCS6A01G288800.1	Wheat	cytosol, plastid	14.39	19.54
Zm00001d046663_P001	Maize	cytosol	13.91	19.46
GSMUA_Achr3P06300_001	Banana	cytosol	24.22	19.35
EER90075	Sorghum	nucleus	13.91	19.14
Zm00001d051736_P001	Maize	cytosol	15.11	19.09
Os02t0727700-01	Rice	cytosol, nucleus, plastid	14.15	18.97
Bra004589.1-P	Field mustard	nucleus	11.03	18.85
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	16.79	18.77
TraesCS6B01G318600.1	Wheat	cytosol, plastid	13.67	18.57
OQU85475	Sorghum	cytosol	14.15	18.44
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	17.27	18.14
Bra006709.1-P	Field mustard	plastid	16.79	17.81
Bra030854.1-P	Field mustard	nucleus	13.19	17.63
Bra000207.1-P	Field mustard	mitochondrion, nucleus	13.19	17.35
Bra007253.1-P	Field mustard	mitochondrion, nucleus	12.71	17.1
Bra020313.1-P	Field mustard	plastid	15.59	16.71
Bra002559.1-P	Field mustard	plastid	15.83	16.62
Bra038246.1-P	Field mustard	nucleus	12.95	16.62
Bra005020.1-P	Field mustard	nucleus, plastid	13.43	16.42
Bra011215.1-P	Field mustard	cytosol	8.87	15.95
Zm00001d053704_P001	Maize	cytosol	13.43	15.73
HORVU6Hr1G072430.1	Barley	cytosol	13.67	15.66
Bra035835.1-P	Field mustard	nucleus	12.23	15.6
Bra027436.1-P	Field mustard	nucleus	11.51	15.53
Bra000143.1-P	Field mustard	nucleus	13.91	15.47
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	14.15	15.25
TraesCS6D01G160300.1	Wheat	nucleus	12.71	15.23
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	11.75	15.08
Bra002823.1-P	Field mustard	nucleus	12.71	15.06
TraesCS7D01G387300.1	Wheat	cytosol	11.75	15.03
TraesCS7B01G293600.1	Wheat	cytosol	11.75	14.85
TraesCS7A01G391700.1	Wheat	cytosol	11.75	14.8
Os02t0191500-01	Rice	nucleus	13.19	14.67
Bra037999.1-P	Field mustard	nucleus	10.07	14.48
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	12.71	14.32
Bra037109.1-P	Field mustard	nucleus	11.27	14.07
Bra019109.1-P	Field mustard	nucleus	10.79	13.98
Bra014266.1-P	Field mustard	nucleus	14.15	13.38
TraesCS6B01G198800.1	Wheat	nucleus	12.71	13.22
Bra026444.1-P	Field mustard	nucleus	11.51	12.94
HORVU7Hr1G092570.1	Barley	cytosol	11.75	12.79
Bra028935.1-P	Field mustard	nucleus	13.19	9.68

Protein Annotations

EnsemblPlants:Bra013006.1	EnsemblPlants:Bra013006.1-P	EnsemblPlantsGene:Bra013006	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002540498	UniProt:M4D946	MapMan:35.1	:

Description

AT5G60820 (E=2e-099) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:+:21073475..21074728

Molecular Weight (calculated)

46792.6 Da

IEP (calculated)

3.669

GRAVY (calculated)

-0.680

Length

417 amino acids

Sequence
(BLAST)

001: MAEMSYLQIH DANDAVLNHF NRNLHQRRQH HQSLSQILDS LPHWVQSDDD VDLYVSQSEL DVSAAVGLDL LERRSFVMDL FHQRVEQSQV SPLGGDYESA
101: GSDSGFGVVE GDRDMRGGSL GLDFGLGLGS GRGFVDCDDD DDEDDLFDGI RYLGMDSGDV IVTVESGFDS DVEEDDPEKE IWGVDLNEED EYVNDDDDDD
201: DDEDEDDSVT IPLCWDSLNL EDNEEEFEWE EVDDGDEREV SAEGDDNNSV SVSVSATISQ EDLAIGERRG YLGWEVLLNS RSLEFNLDDA ESNMELYIGG
301: DIDQQEDDED YLHTTEYEML FEAEISSGLG KPPASKSFIK NLKVSPLTKE DVTEENDGDA MCCAVCREEM SVGNEVAELP CRHKYHGECI VPWLGIRNTC
401: PVCRFELPSD ETEQSRF

Best Arabidopsis Sequence Match ( AT5G60820.1 )
(BLAST)

001: MAEMSYLQID DANDAVFNHY RHQRRLHDHL RDQSFSQILY PLPHWIQSDD GDLYISETDF SSGDVSVSDL VFTTDDGLDL LDRRSFVMDL FHQRVEQSQV
101: TPLDNDGIDD FENYEMREDN VELDFGLEME SGNGFVDSDL VVNLNEHVDG MRLLGIESGD VIVTVESCFD SDDEDDQEKE ESEIWGIDLN EEDEYVNDDD
201: DNDDEEEDAS VTIPLCWDSL QLEDLGINNE DCEWEEVDSD DEREVLSVLA EADDNNSVSV SVAATISLED LAISERRGSS NLGWEVLLNS RSLEFNLDDA
301: ESNLELYIGD IDHEEEDYED YLHTTEYEML FEAEISSGIG KPPASKSFIK NLKVSPLSNE DVMENDDDAV CCAVCKEEMI VGKEVAELPC RHKYHSECIV
401: PWLGIRNTCP VCRFELPSD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FJH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.