Factsheet for PGSC0003DMT400063293

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400034833
PGSC0003DMT400042062

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT5G08139.1	PGSC0003DMT400042062	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114680.2.1	Tomato	nucleus	92.82	80.52
VIT_17s0000g04730.t01	Wine grape	nucleus	43.98	43.28
Os06t0633500-01	Rice	cytosol, nucleus	12.27	42.74
KRH56750	Soybean	cytosol	33.8	42.69
KRH03189	Soybean	nucleus	33.56	40.85
CDY02194	Canola	peroxisome	32.64	35.43
CDY51628	Canola	peroxisome	32.87	34.98
AT5G60820.1	Thale cress	cytosol	33.8	34.84
Bra013006.1-P	Field mustard	nucleus	33.33	34.53
CDX69973	Canola	cytosol	28.7	34.44
Bra009323.1-P	Field mustard	cytosol	28.24	32.19
AT5G08139.1	Thale cress	cytosol	27.78	31.91
Bra005970.1-P	Field mustard	cytosol	21.3	31.72
CDY21513	Canola	cytosol	25.93	31.46
CDX78323	Canola	cytosol	20.83	31.25
CDY69134	Canola	cytosol	20.83	30.93
PGSC0003DMT400003515	Potato	nucleus	24.54	28.57
GSMUA_Achr8P24510_001	Banana	cytosol	26.16	28.54
PGSC0003DMT400068309	Potato	cytosol	25.23	27.39
TraesCS6A01G288800.1	Wheat	cytosol, plastid	18.75	26.38
TraesCS6B01G318600.1	Wheat	cytosol, plastid	18.29	25.73
OQU85475	Sorghum	cytosol	18.98	25.62
Os02t0727700-01	Rice	cytosol, nucleus, plastid	18.29	25.4
Zm00001d051736_P001	Maize	cytosol	18.98	24.85
GSMUA_Achr3P06300_001	Banana	cytosol	27.55	22.8
HORVU6Hr1G072430.1	Barley	cytosol	18.52	21.98
PGSC0003DMT400081469	Potato	nucleus	18.75	21.43
Os08t0487500-01	Rice	plastid	13.43	21.4
TraesCS7A01G247700.1	Wheat	cytosol, plastid	13.19	21.19
Zm00001d046663_P001	Maize	cytosol	14.58	21.14
TraesCS7D01G246300.1	Wheat	plastid	12.96	20.82
TraesCS7B01G144100.1	Wheat	plastid	12.96	20.82
EER90075	Sorghum	nucleus	14.58	20.79
PGSC0003DMT400082489	Potato	nucleus	15.28	20.5
EES14331	Sorghum	plastid	13.43	19.8
Zm00001d031273_P001	Maize	cytosol, plastid	12.96	19.38
TraesCS7A01G391700.1	Wheat	cytosol	14.35	18.73
TraesCS7D01G387300.1	Wheat	cytosol	14.12	18.71
TraesCS7B01G293600.1	Wheat	cytosol	14.12	18.48
PGSC0003DMT400079301	Potato	nucleus	12.73	18.33
PGSC0003DMT400058464	Potato	nucleus	13.19	17.92
TraesCS6D01G160300.1	Wheat	nucleus	14.35	17.82
Zm00001d053704_P001	Maize	cytosol	14.35	17.42
PGSC0003DMT400026380	Potato	nucleus	15.28	17.05
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	15.28	17.05
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	14.35	16.76
HORVU7Hr1G092570.1	Barley	cytosol	14.81	16.71
PGSC0003DMT400061055	Potato	extracellular	10.88	15.77
PGSC0003DMT400046527	Potato	nucleus	12.96	15.56
TraesCS6B01G198800.1	Wheat	nucleus	14.35	15.46
Os02t0191500-01	Rice	nucleus	13.19	15.2
PGSC0003DMT400002370	Potato	cytosol	11.11	14.86
PGSC0003DMT400005512	Potato	mitochondrion	13.19	14.77
PGSC0003DMT400069320	Potato	nucleus	13.66	14.68
PGSC0003DMT400016233	Potato	nucleus	12.96	14.21
PGSC0003DMT400071362	Potato	nucleus	14.35	13.11

Protein Annotations

EnsemblPlants:PGSC0003DMT400063293	EnsemblPlantsGene:PGSC0003DMG400024614	EntrezGene:102578405	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	PFAM:PF13639	PFscan:PS50089
PGSC:PGSC0003DMG400024614	RefSeq:XP_006345087.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00029562CC
UniProt:M1CAE6	MapMan:35.1	:	:	:	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024614]

Coordinates

chr3:-:54622613..54624268

Molecular Weight (calculated)

49310.1 Da

IEP (calculated)

3.818

GRAVY (calculated)

-0.684

Length

432 amino acids

Sequence
(BLAST)

001: MAQVSISLLN FLNDGEDDVI EHENDVVEDL DSSPYWPLSF GDFDVYDPPD LSDFASRPQI SSYSRRRTGL ALSDDVSETD SVVTVMDREN QVNFVMDMFQ
101: QRVEQSQSLI RVVSNPDLLH ADPELEADFG LIGGNEFMGM SSLDVDFGLG LGFRGVTDNS GFHIEDCDGP EQFVSGLRVV DNESDWDPDD NCVSGRLFNL
201: DEVDGDDEDE NIRDNESDDP SLRLCWGSFQ LEDHRDVNED FEWEEIDGRV DEREILSMFL DVEEISESPA PEDRARELEN LEWEFLLNVQ NFEPDPEITN
301: EEFNFGRHMD QDDYNYTTEY ELLFGQFAEG DNGFVGRPPA SKTVVRDLPT VAVSKDDLEK NNATCAICKD ELNLGEKARQ LPCAHRYHGD CIQPWLGIRN
401: TCPVCRYELP TDDPGYERRR RVQTTHTLDQ ID

Best Arabidopsis Sequence Match ( AT5G08139.1 )
(BLAST)

001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.