Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g075910.1.1 | Tomato | nucleus | 97.0 | 96.68 |
| KRH33121 | Soybean | nucleus | 46.67 | 45.31 |
| KRH71659 | Soybean | nucleus | 46.33 | 44.98 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 46.67 | 44.59 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 32.67 | 42.42 |
| Bra004589.1-P | Field mustard | nucleus | 34.33 | 42.21 |
| EER92269 | Sorghum | nucleus | 39.67 | 41.75 |
| Os03t0351800-01 | Rice | nucleus | 39.33 | 41.7 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 34.67 | 40.15 |
| Zm00001d047476_P001 | Maize | mitochondrion | 39.0 | 40.07 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 42.33 | 40.06 |
| CDY35437 | Canola | mitochondrion, nucleus | 42.33 | 40.06 |
| AT2G40830.4 | Thale cress | mitochondrion | 43.67 | 39.94 |
| Bra014684.1-P | Field mustard | nucleus | 25.33 | 39.58 |
| CDX75998 | Canola | nucleus | 25.33 | 39.58 |
| CDX79968 | Canola | mitochondrion, nucleus | 39.0 | 39.39 |
| CDY23878 | Canola | mitochondrion, nucleus | 40.0 | 39.34 |
| PGSC0003DMT400058464 | Potato | nucleus | 41.67 | 39.31 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 37.67 | 39.1 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 37.33 | 38.75 |
| CDY22483 | Canola | mitochondrion | 39.0 | 38.61 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 37.0 | 38.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.0 | 38.37 |
| AT3G56580.1 | Thale cress | mitochondrion | 40.67 | 38.12 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 36.67 | 38.06 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 38.67 | 37.42 |
| CDY27204 | Canola | mitochondrion, nucleus | 38.67 | 37.18 |
| CDX72127 | Canola | mitochondrion | 38.67 | 36.71 |
| GSMUA_Achr11P... | Banana | mitochondrion | 34.67 | 34.78 |
| CDX94901 | Canola | cytosol | 33.33 | 31.85 |
| PGSC0003DMT400002370 | Potato | cytosol | 27.33 | 25.39 |
| PGSC0003DMT400082489 | Potato | nucleus | 25.33 | 23.6 |
| PGSC0003DMT400061055 | Potato | extracellular | 22.33 | 22.48 |
| PGSC0003DMT400016233 | Potato | nucleus | 28.67 | 21.83 |
| PGSC0003DMT400046527 | Potato | nucleus | 25.33 | 21.11 |
| PGSC0003DMT400026380 | Potato | nucleus | 27.0 | 20.93 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 25.67 | 19.95 |
| PGSC0003DMT400069320 | Potato | nucleus | 24.67 | 18.41 |
| PGSC0003DMT400081469 | Potato | nucleus | 21.0 | 16.67 |
| PGSC0003DMT400003515 | Potato | nucleus | 16.67 | 13.48 |
| PGSC0003DMT400063293 | Potato | nucleus | 18.33 | 12.73 |
| PGSC0003DMT400071362 | Potato | nucleus | 19.67 | 12.47 |
| PGSC0003DMT400068309 | Potato | cytosol | 15.33 | 11.56 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400079301 | EnsemblPlantsGene:PGSC0003DMG400030864 | EntrezGene:102583047 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | PGSC:PGSC0003DMG400030864 | RefSeq:XP_006364474.1 | RefSeq:XP_006364475.1 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0002962869 | UniProt:M1D1K5 | MapMan:35.1 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030864]
Coordinates
chr8:+:48307010..48309308
Molecular Weight (calculated)
33675.7 Da
IEP (calculated)
8.013
GRAVY (calculated)
-0.943
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDSCSHWC YSCRQPVNLR RQNDVCPNCG GGFVQELEDI TSSSVDNQSQ RPRFMESVSN FLRRQISTTS NTSERGRSDG GAERGNLWNP LLIFSGDTPV
101: QMPGDGGVLE FLNEALGFRQ ENGGDYFVGP GVEEFFEEIV NRNQRGAPPA SRCSIDSLPT VKISKKDVRS DSHCPVCKEK FALGTKATKL PCKHLYHSDC
201: ITPWLEQKNS CPVCRKELIP EKSGNDHSSR NSRSESRSSS RRVSARENSS QNQERRRPWS SLWNFGSSRS SSRSTPAAET SSQTSHQHNN YSEYSNWPFE
101: QMPGDGGVLE FLNEALGFRQ ENGGDYFVGP GVEEFFEEIV NRNQRGAPPA SRCSIDSLPT VKISKKDVRS DSHCPVCKEK FALGTKATKL PCKHLYHSDC
201: ITPWLEQKNS CPVCRKELIP EKSGNDHSSR NSRSESRSSS RRVSARENSS QNQERRRPWS SLWNFGSSRS SSRSTPAAET SSQTSHQHNN YSEYSNWPFE
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.