Factsheet for PGSC0003DMT400016233

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011610.1.1	Tomato	nucleus	98.48	98.23
GSMUA_Achr7P15040_001	Banana	mitochondrion	48.98	61.08
KRG97885	Soybean	mitochondrion	53.81	59.38
KRH30994	Soybean	nucleus	58.12	58.27
GSMUA_Achr10P...	Banana	mitochondrion	48.48	56.68
PGSC0003DMT400005512	Potato	mitochondrion	55.08	56.22
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	48.48	55.52
EER95109	Sorghum	plastid	38.58	55.27
Os03t0271600-01	Rice	plastid	39.09	55.2
TraesCS4D01G209500.1	Wheat	plastid	39.09	55.0
TraesCS4B01G209100.1	Wheat	plastid	39.09	55.0
TraesCS4A01G095800.1	Wheat	cytosol	39.09	55.0
Os05t0110000-01	Rice	mitochondrion	46.45	54.95
Zm00001d028590_P001	Maize	plastid	38.58	54.68
Zm00001d047824_P001	Maize	plastid	38.58	54.68
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	48.48	54.42
GSMUA_Achr5P07070_001	Banana	nucleus	44.92	53.8
GSMUA_Achr2P19140_001	Banana	mitochondrion	48.48	52.76
TraesCS3D01G532300.1	Wheat	cytosol	51.52	52.59
Zm00001d035677_P001	Maize	plastid	45.18	51.15
TraesCS3B01G595200.1	Wheat	cytosol	51.78	51.13
GSMUA_Achr10P...	Banana	mitochondrion	50.76	49.75
TraesCS1A01G029800.1	Wheat	cytosol	49.75	49.12
TraesCS1B01G036900.1	Wheat	cytosol	49.24	48.62
EES17560	Sorghum	plastid	50.76	48.43
TraesCS1D01G030300.1	Wheat	nucleus	49.24	48.26
HORVU1Hr1G004330.14	Barley	cytosol	48.73	47.88
HORVU3Hr1G041030.1	Barley	mitochondrion	46.7	47.55
Zm00001d011076_P001	Maize	plastid	45.94	46.77
HORVU7Hr1G055010.1	Barley	cytosol	25.89	46.15
Os01t0972000-01	Rice	nucleus	37.82	44.61
HORVU4Hr1G060130.1	Barley	cytosol	39.09	43.75
HORVU3Hr1G115000.7	Barley	mitochondrion	43.15	43.37
GSMUA_Achr10P...	Banana	nucleus	29.95	41.84
PGSC0003DMT400058464	Potato	nucleus	24.11	29.87
PGSC0003DMT400079301	Potato	nucleus	21.83	28.67
PGSC0003DMT400082489	Potato	nucleus	22.08	27.02
PGSC0003DMT400046527	Potato	nucleus	23.6	25.83
PGSC0003DMT400026380	Potato	nucleus	24.87	25.32
PGSC0003DMT400061055	Potato	extracellular	19.04	25.17
PGSC0003DMT400002370	Potato	cytosol	20.05	24.46
PGSC0003DMT400081469	Potato	nucleus	20.56	21.43
PGSC0003DMT400069320	Potato	nucleus	20.81	20.4
PGSC0003DMT400071362	Potato	nucleus	18.78	15.64
PGSC0003DMT400003515	Potato	nucleus	13.2	14.02
PGSC0003DMT400068309	Potato	cytosol	13.96	13.82
PGSC0003DMT400063293	Potato	nucleus	14.21	12.96

Protein Annotations

EntrezGene:102605063	Gene3D:3.30.40.10	MapMan:35.1	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
UniProt:M1A7B4	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	EnsemblPlantsGene:PGSC0003DMG400006344	PGSC:PGSC0003DMG400006344
EnsemblPlants:PGSC0003DMT400016233	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI000296C0A5	RefSeq:XP_006346709.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006344]

Coordinates

chr4:+:7401185..7406061

Molecular Weight (calculated)

42561.6 Da

IEP (calculated)

8.298

GRAVY (calculated)

-0.527

Length

394 amino acids

Sequence
(BLAST)

001: MSSTYWCYRC NRFYRVWSEE SIACPDCNTG FVEEIEAPTR STLSGSRRRR IPPAVMQTAA RSTEQSPASG YGSGSSPGVR RNRRNTGDRS PFNPVIVLRG
101: STNGGGAGGE GGGGGGGGFE LYYDDGTGSG LRPLPTSMSE FLLGSGFDRL LDQLAQIEAN GIGRIENPPA SKAAIESLPT IEIIHSHIVT ESCCAVCKEA
201: FELGTEAREM PCKHLYHSDC ILPWLSLRNS CPVCRHELPS ESRDVVDPNR APSEQSEQSV ATNNEVEEAV GLTIWRLPGG GFAVGRLGRR GGERALPVVF
301: TEMDGGFNNN NNNGVPRRIS WGSRGSESRQ SGGFRRFFGN LFSCFGGVGS SGSSSSSDSR INQSRSSSMS SVFLATARRR RGWGFEANNG VRRW

Best Arabidopsis Sequence Match ( AT2G39720.2 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.